NAME

       Bio::SeqIO::gbxml - GenBank sequence input/output stream using SAX

SYNOPSIS

       It is probably best not to use this object directly, but rather go through the SeqIO
       handler system. To read a GenBank XML file:

          $stream = Bio::SeqIO->new( -file => $filename, -format => 'gbxml');

          while ( my $bioSeqObj = $stream->next_seq() ) {
               # do something with $bioSeqObj
          }

       To write a Seq object to the current file handle in GenBank XML format:

          $stream->write_seq( -seq => $seqObj);

       If instead you would like a XML::DOM object containing the GBXML, use:

          my $newXmlObject = $stream->to_bsml( -seq => $seqObj);

DEPENDENCIES

       In addition to parts of the Bio:: hierarchy, this module uses:

       XML::SAX

DESCRIPTION

       This object can transform Bio::Seq objects to and from GenBank XML flatfiles.

FEEDBACK

   Mailing Lists
       User feedback is an integral part of the evolution of this and other Bioperl modules. Send
       your comments and suggestions preferably to one of the Bioperl mailing lists.  Your
       participation is much appreciated.

        bioperl-l@bioperl.org                  - General discussion
        http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their
       resolution. Bug reports can be submitted via the web:

        https://redmine.open-bio.org/projects/bioperl/

AUTHOR - Ryan Golhar

       Email golharam-at-umdnj-dot-edu

METHODS

   next_seq
       Title   : next_seq Usage   : my $bioSeqObj = $stream->next_seq Function: Retrieves the
       next sequence from a SeqIO::gbxml stream.  Returns : A reference to a Bio::Seq::RichSeq
       object Args    :