Provided by: libbio-perl-perl_1.6.923-1_all
NAME
Bio::TreeIO::nexml - A TreeIO driver module for parsing NeXML tree files
SYNOPSIS
use Bio::TreeIO; my $in = Bio::TreeIO->new(-file => 'data.nexml' -format => 'Nexml'); while( my $tree = $in->next_tree ) { }
DESCRIPTION
This is a driver module for parsing tree data in a NeXML format. For more information on NeXML, visit <http://www.nexml.org>.
FEEDBACK
Mailing Lists User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated. bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists Support Please direct usage questions or support issues to the mailing list: bioperl-l@bioperl.org rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible. Reporting Bugs Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web: https://redmine.open-bio.org/projects/bioperl/
AUTHOR - Chase Miller
Email chmille4@gmail.com
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _ next_tree Title : next_tree Usage : my $tree = $treeio->next_tree Function: Gets the next tree in the stream Returns : L<Bio::Tree::TreeI> Args : none doc Title : doc Usage : $treeio->doc Function: Returns the biophylo nexml document object Returns : Bio::Phylo::Project Args : none or Bio::Phylo::Project object rewind Title : rewind Usage : $treeio->rewind Function: Resets the stream Returns : none Args : none write_tree Title : write_tree Usage : $treeio->write_tree($tree); Function: Writes a tree onto the stream Returns : none Args : L<Bio::Tree::TreeI>