NAME

       ANTSJacobian - part of ANTS registration suite

SYNOPSIS

       ANTSJacobian  ImageDim  gWarp  outfile  uselog  maskfn  normbytotalbool use-2nd-order-central-difference-
       boolean

DESCRIPTION

              for example ANTSJacobian  3   myWarp.nii    Output   1    templatebrainmask.nii    1  the  last  1
              normalizes the jacobian by the total in the mask.  use this to adjust for head size.