NAME

       sbai - Shape-Based Averaging and interpolation of label images

SYNOPSIS

       sbai InputImageVector

DESCRIPTION

       Average  segmentations  (label  fields)  using the Euclidean Distance Transform. This tool
       performs joint interpolation and averaging by interpolating from the  EDT.  This  requires
       that  the  inputs  are  transformations from the same fixed to (not necessarily) different
       moving  images.  EDT  computation  is  done  in  the  space  of  each  moving  image.  See
       http://dx.doi.org/10.1109/TIP.2006.884936 for details of the underlying algorithm.

OPTIONS

   Global Toolkit Options (these are shared by all CMTK tools)
       --help
            Write list of basic command line options to standard output.

       --help-all
            Write complete list of basic and advanced command line options to standard output.

       --wiki
            Write list of command line options to standard output in MediaWiki markup.

       --man
            Write man page source in 'nroff' markup to standard output.

       --version
            Write toolkit version to standard output.

       --echo
            Write the current command line to standard output.

       --verbose-level <integer>
            Set verbosity level.

       --verbose, -v
            Increment verbosity level by 1 (deprecated; supported for backward compatibility).

       --threads <integer>
            Set maximum number of parallel threads (for POSIX threads and OpenMP).

   Input Options
       --num-labels <integer>, -n <integer>
            Number  of  labels.  It  is  assumed  that  only  values [0..num] occur in the images
            [Default: 0]

       --padding <float>, -p <float>
            Padding value in input image [Default: disabled]

       --replace-from <string>
            Replace from pattern

       --replace-to <string>
            Replace to pattern

   Output Options
       --output <string>, -o <string>
            File name for output segmentation file.  [Default: sbai.nii ]

AUTHORS

       Torsten Rohlfing, with contributions from Michael  P.  Hasak,  Greg  Jefferis,  Calvin  R.
       Maurer, Daniel B. Russakoff, and Yaroslav Halchenko

LICENSE

       http://www.fsf.org/licensing/licenses/gpl.html

BUGS

       Report bugs at http://nitrc.org/projects/cmtk/

ACKNOWLEDGMENTS

       CMTK is developed with support from the NIAAA under Grant AA021697, National Consortium on
       Alcohol and Neurodevelopment in Adolescence (N-CANDA): Data  Integration  Component.  From
       April  2009  through September 2011, CMTK development and maintenance was supported by the
       NIBIB under Grant EB008381.