NAME

       domainreso - Remove low resolution domains from a DCF file.

SYNOPSIS

       domainreso -cpdbpath dirlist -dcfinfile infile -threshold float -dcfoutfile outfile

       domainreso -help

DESCRIPTION

       domainreso is a command line program from EMBOSS (“the European Molecular Biology Open
       Software Suite”). It is part of the "PROTEIN:3D STRUCTURE" command group(s).

OPTIONS

   Input section
       -cpdbpath dirlist
           This option specifies the location of domain CCF file (clean coordinate files)
           (input). A 'clean cordinate file' contains coordinate and other data for a single PDB
           file or a single domain from SCOP or CATH, in CCF format (EMBL-like). The files,
           generated by using PDBPARSE (pdb files) or DOMAINER (domains), contain 'cleaned-up'
           data that is self-consistent and error-corrected. Records for residue solvent
           accessibility and secondary structure are added to the file by using PDBPLUS. Default
           value: ./

       -dcfinfile infile
           This option specifies the name of DCF file (domain classification file) (input). A
           'domain classification file' contains classification and other data for domains from
           SCOP or CATH, in DCF format (EMBL-like). The files are generated by using SCOPPARSE
           and CATHPARSE. Domain sequence information can be added to the file by using
           DOMAINSEQS.

   Required section
       -threshold float
           This option specifies the threshold for inclusion (Angstroms). Domains exceeding the
           threshold for inclusion (Angstroms) will not be given in the output file. Default
           value: 2.8

   Output section
       -dcfoutfile outfile
           This option specifies the name of DCF file (domain classification file) (output). A
           'domain classification file' contains classification and other data for domains from
           SCOP or CATH, in DCF format (EMBL-like). The files are generated by using SCOPPARSE
           and CATHPARSE. Domain sequence information can be added to the file by using
           DOMAINSEQS. Default value: test.scop

BUGS

       Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or
       directly to the EMBOSS developers
       (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

SEE ALSO

       domainreso is fully documented via the tfm(1) system.

AUTHOR

       Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
           Wrote the script used to autogenerate this manual page.

COPYRIGHT

       This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package.
       It can be redistributed under the same terms as EMBOSS itself.