NAME

       gt-readjoiner-prefilter - Remove contained and low-quality reads and encode read set in
       GtEncseq format.

SYNOPSIS

       gt readjoiner prefilter [option ...]

OPTIONS

       -readset
           specify the readset name (default: filename of first input sequence_file)

       -db
           specify a list of input libraries (Fasta/FastQ); for single-end libraries use the
           filename (which is not allowed to contain : symbols); for paired-end libraries with
           reads interleaved (f,r,f,r,...) in a single file use the notation
           <filename>:<insertlength>[,<stdev>] (stdev may be omitted); for paired-end with reads
           in two files (f, r) use the notation <file_f>:<file_r>:<insertlength>[,<stdev>]

       -v
           be verbose (default: no)

       -q
           suppress standard output messages (default: no)

       -help
           display help for basic options and exit

       -help+
           display help for all options and exit

       -version
           display version information and exit

AUTHOR

       Report bugs to <gt-users@genometools.org>.

                                            10/07/2012                      GT-READJOINER-PREF(1)