NAME

       last-map-probs.py - Add extra column with mapping probabilities

DESCRIPTION

   Usage:
              last-map-probs.py --help last-map-probs.py [options] lastal-alignments

       Calculate  a  mismap probability for each alignment.  This is the probability that the alignment does not
       reflect the origin of the query sequence, assuming that one reported alignment does reflect the origin of
       each query.

OPTIONS

       -h, --help
              show this help message and exit

       -m M, --mismap=M
              don't write alignments with mismap probability > M (default: 0.01)

       -s S, --score=S
              don't write alignments with score < S (default: 0)

last-map-probs.py 393                             January 2014                              LAST-MAP-PROBS.PY(1)