xenial (1) fslview.1.gz

NAME

       fslview - viewer for 3d and 4d MRI data and DTI images

SYNOPSIS

       fslview [-m <viewmode>] [<baseimage> [imageoptions] ... ]

DESCRIPTION

       FSLView is an interactive display tool for 3D, 4D and DTI data. FSLView can read Analyze and NIFTI files,
       either uncompressed or compressed, and either as a single file (e.g. image.nii.gz)  or  two  files  (e.g.
       image.hdr & image.img). FSLView supports multiple image overlays with indivdual color maps.

       There are four different image viewing modes:

              Ortho - the default view showing axial, orthogonal and sagittal slices.

              Lightbox - shows all axial slices simultaneously.

              Single - shows only a single slice - the orientation can be switched between axial, orthogonal and
              sagittal and you can also turn on auto-scrolling through the slices.

              3d - renders the volume in 3d with optional clipping of brain parts and overlays of metrical data.

       In addition to viewing images FSLView can be used to create image masks and manually edit images.

OPTIONS

       -V, --verbose
              Switch on diagnostic messages.

       -h, --help
              Display a short usage description.

       -m, --mode 3d|ortho|lightbox
              Initial viewer mode (see above mode descriptions).

PER-IMAGE OPTIONS

       -l, --lut <name>
              Color lookup table name. The full list is available via the FSLView GUI (e.g.  on  of:  Greyscale,
              Red-Yellow, Blue-Lightblue, Red, Green, Blue, Yellow, Pink, Hot, Cool, Copper, ...)

       -b, --bricon <min>,<max>
              Initial bricon range, e.g., "2.3,6"

       -t, --trans <value>
              Initial transparency, e.g., 0.2

BUGREPORTS

       If   you   discover   an   bugs   please   report   them   either   to   the   FSL  mailing  list  or  to
       fslview-bugs@fmrib.ox.ac.uk.

AUTHOR

       FSLView was written by Dave Flitney, James Saunders, Mark Jenkinson, Steve Smith and V Rama Aravind.

       This manual page was written by Michael Hanke <michael.hanke@gmail.com>, for the Debian project (but  may
       be used by others).

NOTES

       FSLView  is  able  to  use  brain  atlas  data to identify locations in brain volumes. However, the brain
       atlases that come with FSL are licensed under a non-free (non-commercial) license. Therefore they  cannot
       be included in the FSLView package, which only contains free software.

       Please see /usr/share/doc/fslview/README.Debian for more information.

SEE ALSO

       atlasquery(1), fsl(1)

       FSLView Homepage: http://www.fmrib.ox.ac.uk/fsl/fslview/index.html

       FSL Homepage: http://www.fmrib.ox.ac.uk/fsl/