NAME

       jaligner - Smith-Waterman algorithm with Gotoh´s improvement

SYNOPSIS

       jaligner s1 s2 matrix open extend

       Or just type jaligner to see the GUI.

EXAMPLES

       jaligner p53_{human,mouse}.fasta BLOSUM62 10 0.5

Homepage

       http://jaligner.sourceforge.net/

                                          September 2015                              JALIGNER(1)