NAME

       Bio::DB::Sam::Constants -- Constants for use with SAM/BAM

SYNOPSIS

        use Bio::DB::Sam::Constants;
        my $pad_flag = BAM_CPAD;

DESCRIPTION

       This module exports several constants for use with the SAM/BAM module. See the SAM documentation for
       their interpretation.

       Cigar operations
             BAM_CIGAR_SHIFT
             BAM_CIGAR_MASK
             BAM_CMATCH
             BAM_CINS
             BAM_CDEL
             BAM_CREF_SKIP
             BAM_CSOFT_CLIP
             BAM_CHARD_CLIP
             BAM_CPAD

       FLAGS
           A hashref that maps flag values to human-readable names. For example:

            FLAGS->{0x0008} == 'M_UNMAPPED'

       RFLAGS
           The reverse of FLAGS:

            FLAGS->{M_UNMAPPED} == 0x0008

SEE ALSO

       Bio::Perl, Bio::DB::Sam, Bio::DB::Bam::Alignment

AUTHOR

       Lincoln Stein <lincoln.stein@oicr.on.ca>.  <lincoln.stein@bmail.com>

       Copyright (c) 2009 Ontario Institute for Cancer Research.

       This  package  and  its accompanying libraries is free software; you can redistribute it and/or modify it
       under the terms of the GPL (either version 1, or at your option,  any  later  version)  or  the  Artistic
       License  2.0.   Refer  to  LICENSE  for the full license text. In addition, please see DISCLAIMER.txt for
       disclaimers of warranty.

perl v5.22.1                                       2015-12-17                       Bio::DB::Sam::Constants(3pm)