Provided by: cpl-plugin-uves-doc_5.5.7+dfsg-1_all 
NAME
flames_obs_scired - Reduces a FLAMES science image
SYNOPSIS
esorex flames_obs_scired [OPTIONS] FILE.sof
DESCRIPTION
Fibre & order position determination procedure: You should feed the recipe with: - science fibre images
(FIB_SCI_RED, FIB_SCI_SIM_RED, FIB_SCI_SIM_RED) - single fibre images, FIB_ORDEF_(REDL|REDU) - master
bias frames, MASTER_BIAS_(REDL|REDU) - 3 master slit flatfield frames, MASTER_SFLAT_(REDL|REDU) - Fibre
order table, FIB_ORDEF_TABLE_(REDL|REDU) - Slit flatfield common, SLIT_FF_COM_(REDL|REDU) - Slit
flatfield norm, SLIT_FF_NOR_(REDL|REDU) - Slit flatfield data, SLIT_FF_DTC_(REDL|REDU) - Slit flatfield
sigma, SLIT_FF_SGC_(REDL|REDU) - Slit flatfield bad pixel, SLIT_FF_BPC_(REDL|REDU) - Slit flatfield
boundary, SLIT_FF_BNC_(REDL|REDU) - Fibre flatfield common, FIB_FF_COM_(REDL|REDU) - Fibre flatfield
norm, FIB_FF_NOR_(REDL|REDU) - Fibre flatfield norm sigma, FIB_FF_NSG_(REDL|REDU)
Products are: - Science fibre info table (FIB_SCI_INFO_TAB) - XB_SCI_RAW_(REDL|REDU) -
ERR_XB_SCI_RAW_(REDL|REDU) - WXB_SCI_RAW_(REDL|REDU) - ERR_WXB_SCI_RAW_(REDL|REDU) -
MWXB_SCI_RAW_(REDL|REDU) - ERR_MWXB_SCI_RAW_(REDL|REDU) - XB_SCI_(REDL|REDU) -
ERR_XB_SCI_(REDL|REDU) - WXB_SCI_(REDL|REDU) - ERR_WXB_SCI_(REDL|REDU) - MWXB_SCI_(REDL|REDU) -
ERR_MWXB_SCI_(REDL|REDU)
OPTIONS
--debug <bool>
Whether or not to save intermediate results to local directory (bool; default: False). The full
name of this option for the EsoRex configuration file is uves.debug [default = False].
--plotter <str>
Any plots produced by the recipe are redirected to the command specified by this parameter. The
plotting command must contain the substring ´gnuplot´ and must be able to parse gnuplot syntax on
its standard input. Valid examples of such a command may include ´gnuplot -persist´ and ´cat >
mygnuplot$$.gp´. A finer control of the plotting options can be obtained by writing an executable
script, e.g. my_gnuplot.pl, that executes gnuplot after setting the desired gnuplot options (e.g.
set terminal pslatex color). To turn off plotting, set this parameter to ´no´ (str; default:
´no´). The full name of this option for the EsoRex configuration file is uves.plotter [default =
no].
--process_chip <str>
For RED arm data process the redl, redu, or both chip(s) (str; default: ´both´). The full name of
this option for the EsoRex configuration file is uves.process_chip [default = both].
--ext_method <str>
Extraction method (str; default: ´opt´). The full name of this option for the EsoRex configuration
file is flames_obs_scired.ext_method [default = opt].
--cor_max_fnd <str>
Find correlation maximum? (str; default: ´Y´). The full name of this option for the EsoRex
configuration file is flames_obs_scired.cor_max_fnd [default = Y].
--cor_def_rng <float>
Correlation range size? (float; default: 6.0). The full name of this option for the EsoRex
configuration file is flames_obs_scired.cor_def_rng [default = 6.0].
--cor_def_pnt <long>
Correlation sampling points? (long; default: 25). The full name of this option for the EsoRex
configuration file is flames_obs_scired.cor_def_pnt [default = 25].
--cor_def_off <float>
Correlation center offset? (float; default: 0.0). The full name of this option for the EsoRex
configuration file is flames_obs_scired.cor_def_off [default = 0.0].
--corvel_iter <long>
Velocity correlation iteration number (SimCal) (long; default: 1). The full name of this option
for the EsoRex configuration file is flames_obs_scired.corvel_iter [default = 1].
--bias_method <str>
Bias subtraction method (str; default: ´M´). The full name of this option for the EsoRex
configuration file is flames_obs_scired.bias_method [default = M].
--bias_value <long>
Bias value (only if bias_method = V) (long; default: 200). The full name of this option for the
EsoRex configuration file is flames_obs_scired.bias_value [default = 200].
--cubify_sw <str>
Cubify switch (str; default: ´N´). The full name of this option for the EsoRex configuration file
is flames_obs_scired.cubify_sw [default = N].
--filt_sw <str>
Filter switch (str; default: ´none´). The full name of this option for the EsoRex configuration
file is flames_obs_scired.filt_sw [default = none].
--bkg_max_io_win <long>
Background window number in each full inter order (long; default: 500). The full name of this
option for the EsoRex configuration file is flames_obs_scired.bkg_max_io_win [default = 500].
--bkg_xy_win_sz_x <long>
x maximum size of each background window: (long; default: 6). The full name of this option for
the EsoRex configuration file is flames_obs_scired.bkg_xy_win_sz_x [default = 6].
--bkg_xy_win_sz_y <long>
y maximum size of each background window: (long; default: 2). The full name of this option for
the EsoRex configuration file is flames_obs_scired.bkg_xy_win_sz_y [default = 2].
--pixel_thresh_max <long>
Pixel saturation threshold max (long; default: 55000). The full name of this option for the EsoRex
configuration file is flames_obs_scired.pixel_thresh_max [default = 55000].
--pixel_thresh_min <long>
Pixel saturation threshold min (long; default: -20). The full name of this option for the EsoRex
configuration file is flames_obs_scired.pixel_thresh_min [default = -20].
--drs_k_s_thre <float>
Kappa sigma threshold (float; default: 10.0). The full name of this option for the EsoRex
configuration file is flames_obs_scired.drs_k_s_thre [default = 10.0].
--drs_base_name <str>
Base name for science products (str; default: ´fxb´). The full name of this option for the EsoRex
configuration file is flames_obs_scired.drs_base_name [default = fxb].
--drs_maxyshift <float>
Half width of the interval to scan for correlation, when determining y shift (float; default:
3.0). The full name of this option for the EsoRex configuration file is
flames_obs_scired.drs_maxyshift [default = 3.0].
--drs_ext_w_siz <float>
Integration window size good: 10 (if fibre deconvolution works fine) (float; default: 10.0). The
full name of this option for the EsoRex configuration file is flames_obs_scired.drs_ext_w_siz
[default = 10.0].
--merge <str>
Order merging method. If ´optimal´, the flux in the overlapping region is set to the (optimally
computed, using the uncertainties) average of single order spectra. If ´sum´, the flux in the
overlapping region is computed as the sum of the single order spectra. If flat-fielding is done,
method ´optimal´ is recommended, otherwise ´sum´. (str; default: ´optimal´). The full name of this
option for the EsoRex configuration file is flames_obs_scired.merge [default = optimal].
--merge_delt1 <float>
Order merging left hand (short wavelength) cut. To reduce the amount of order overlapping regions
we allow to cut short and long wavelength ranges. This may reduce the ripple possibly introduced
by the order merging. Suggested values are: 10 (W<=390), 12 (390<W<=437, 520<W<=564), 14
(437<W<=520, 564<W<860), 4 (W>=860) (float; default: -1.0). The full name of this option for the
EsoRex configuration file is flames_obs_scired.merge_delt1 [default = -1.0].
--merge_delt2 <float>
Order merging right hand (long wavelength) cut. To reduce the amount of order overlapping regions
we allow to cut short and long wavelength ranges. This may reduce the ripple possibly introduced
by the order merging. Suggested values is 4 for W<860, else 0 (float; default: -1.0). The full
name of this option for the EsoRex configuration file is flames_obs_scired.merge_delt2 [default =
-1.0].
--clean_tmp_products <bool>
Input data format (bool; default: False). The full name of this option for the EsoRex
configuration file is flames_obs_scired.clean_tmp_products [default = False].
--rebin.wavestep <float>
The bin size (in w.l.u.) in wavelength space. If negative, a step size of 2/3 * ( average pixel
size ) is used. (float; default: -1.0). The full name of this option for the EsoRex configuration
file is flames_obs_scired.rebin.wavestep [default = -1.0].
--rebin.scale <bool>
Whether or not to multiply by the factor dx/dlambda (pixels per wavelength) during the rebinning.
This option is disabled as default in concordance with the method used in the MIDAS pipeline. This
option should be set to true to convert the observed flux (in pixel-space) to a flux per
wavelength (in wavelength-space). (bool; default: False). The full name of this option for the
EsoRex configuration file is flames_obs_scired.rebin.scale [default = False].
Note that it is possible to create a configuration file containing these options, along with suitable
default values. Please refer to the details provided by the 'esorex --help' command.
SEE ALSO
The full documentation for the uves pipeline can be downloaded as a PDF file using the following URL:
ftp://ftp.eso.org/pub/dfs/pipelines/uves/uves-pipeline-manual-5.5.7.pdf
An overview over the existing ESO pipelines can be found on the web page
http://www.eso.org/sci/software/pipelines/.
Basic documentation about the EsoRex program can be found at the esorex (1) man page.
It is possible to call the pipelines from python using the python-cpl package. See
http://packages.python.org/python-cpl/index.html for further information.
The other recipes of the uves pipeline are flames_cal_mkmaster(7), flames_cal_orderpos(7),
flames_cal_predict(7), flames_cal_prep_sff_ofpos(7), flames_cal_wavecal(7), flames_obs_redchain(7),
flames_utl_unpack(7), uves_cal_cd_align(7), uves_cal_mbias(7), uves_cal_mdark(7), uves_cal_mflat(7),
uves_cal_mflat_combine(7), uves_cal_mkmaster(7), uves_cal_orderpos(7), uves_cal_predict(7),
uves_cal_response(7), uves_cal_tflat(7), uves_cal_wavecal(7), uves_obs_redchain(7), uves_obs_scired(7),
uves_utl_ima_arith(7), uves_utl_remove_crh_single(7)
VERSION
flames_obs_scired 5.5.7
AUTHOR
Andrea Modigliani <cpl@eso.org>
BUG REPORTS
Please report any problems to cpl@eso.org. Alternatively, you may send a report to the ESO User Support
Department <usd-help@eso.org>.
LICENSE
This file is part of the FLAMES/UVES Pipeline Copyright (C) 2004, 2005, 2006, 2007 European Southern
Observatory
This program is free software; you can redistribute it and/or modify it under the terms of the GNU
General Public License as published by the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even
the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public
License for more details.
You should have received a copy of the GNU General Public License along with this program; if not, write
to the Free Software Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02111-1307 USA
flames_obs_scired 5.5.7 FLAMES_OBS_SCIRED(7)