xenial (1) DAM2fasta.1.gz

NAME

       DAM2fasta - get fasta files from Dazzler map DB

SYNOPSIS

       DAM2fasta [-vU] [-wint(80)] path:dam

DESCRIPTION

       The  set  of  .fasta  files  for  the given map DB or DAM are recreated from the DAM exactly as they were
       input.  That is, this is a perfect inversion, including the reconstitution of the proper  .fasta  headers
       and  the  concatenation  of  contigs  with  the proper number of N's between them.  By default the output
       sequences are in lower case and 80 chars per line.  The -U option specifies upper case  should  be  used,
       and the characters per line, or line width, can be set to any positive value with the -w option.

SEE ALSO

       daligner(1)