NAME

       Transdecoder.LongOrfs - Transcriptome Protein Prediction

USAGE

       Required:

        -t <string>                            transcripts.fasta

       Optional:

        -m <int>                               minimum protein length (default: 100)

        -G <string>                            genetic code (default: universal; see PerlDoc; options: Euplotes, Tetrahymena, Candida, Acetabularia)

        -S                                     strand-specific (only analyzes top strand)

Genetic Codes

       See <http://golgi.harvard.edu/biolinks/gencode.html>. These are currently supported:

        universal (default)
        Euplotes
        Tetrahymena
        Candida
        Acetabularia
        Mitochondrial-Canonical
        Mitochondrial-Vertebrates
        Mitochondrial-Arthropods
        Mitochondrial-Echinoderms
        Mitochondrial-Molluscs
        Mitochondrial-Ascidians
        Mitochondrial-Nematodes
        Mitochondrial-Platyhelminths
        Mitochondrial-Yeasts
        Mitochondrial-Euascomycetes
        Mitochondrial-Protozoans

                                            2015-12-28                   TRANSDECODER.LONGORFS(1)