xenial (1) aevol_misc_robustness.1.gz

Provided by: aevol_4.4-1_amd64 bug

NAME
       aevol - an in silico experimental evolution platform


SYNOPSIS
       aevol_misc_robustness -h | --help
       aevol_misc_robustness -V | --version
       aevol_misc_robustness -g GENER [-n NBCHILDREN] [-i INDEX | -r RANK]


DESCRIPTION
       Aevol  is  a  simulation  platform  that  allows  one  to  let populations of digital organisms evolve in
       different conditions and study experimentally the mechanisms responsible for  the  structuration  of  the
       genome and the transcriptome.

       aevol_misc_robustness
              computes  the  replication  statistics  of  all  the  individuals  of a given generation, like the
              proportion of neutral, beneficial, deleterious offsprings. This is done by  simulating  NBCHILDREN
              replications  for each individual (1000 replications by default), with its mutation, rearrangement
              and transfer rates. Depending on those rates and genome size, there can be several  mutations  per
              replication.  Those  global statistics are written in stat/robustness_GENER.out, with one line per
              individual in the specified generation.  The program also outputs detailed statistics for  one  of
              the individuals (the best one by default). The detailed statistics for this individual are written
              in stats/replication_GENER.out, with one line per simulated child of this particular individual.


OPTIONS
       -h, --help
              print help, then exit

       -V, --version
              print version number, then exit

       -g, --gener GENER
              specify the generation number for which the robustness statistics are desired

       -n, --nb-children NBCHILDREN
              specify the number of reproductions to simulate for each individual

       -i, --index INDEX
              specify the index (ID in current generation) of the  individual  for  whom  detailed  reproduction
              statistics are desired

       -r, --rank RANK
              specify the rank of the individual for whom detailed reproduction statistics are desired


SEE ALSO
       aevol_create, aevol_modify, aevol_propagate, aevol_run, aevol_misc_view_generation, aevol_misc_create_eps