NAME

       atlasquery - commandline tool to query brain atlases about stereotaxic coordinates

SYNOPSIS

       atlasquery -a "<atlasname>" [-m <maskimage>] [-c <X>,<Y>,<Z>]

DESCRIPTION

       atlasquery  provides  information  about  stereotaxic  brain  coordinates  by querying brain atlases. FSL
       provides nine different atlases that can be used with atlasquery. Please  note  that  these  atlases  are
       covered by a non-commercial licenses and are not part of Debian.

       However,  as  the format of the atlases is documented in the HTML documentation of FSLView it is easy the
       produce new atlases (at least technically).

       The -a option which selects the to be queried atlas is compulsory.

       Atlases should be put into /usr/share/fsl/data/atlases. By setting the environment variable  FSLATLASPATH
       to a different path one can customize this location.

       Please see /usr/share/doc/fslview/README.Debian for more information.

OPTIONS

       -V, --verbose
              Switch on diagnostic messages.

       -h, --help
              Display a short usage description.

       -m, --mask
              A mask image to use during structural lookups.

       -c, --dumpatlases
              Print a list of the available atlases.

BUGREPORTS

       If   you   discover   an   bugs   please   report   them   either   to   the   FSL  mailing  list  or  to
       fslview-bugs@fmrib.ox.ac.uk.

AUTHOR

       atlasqeury was written by Dave Flitney.

       This manual page was written by Michael Hanke <michael.hanke@gmail.com>, for the Debian project (but  may
       be used by others).

SEE ALSO

       fslview(1), fsl(1)

       FSLView Homepage: http://www.fmrib.ox.ac.uk/fsl/fslview

       FSL Homepage: http://www.fmrib.ox.ac.uk/fsl/

Michael Hanke                                      August 2007                                     ATLASQUERY(1)