NAME

       bowtie-inspect - extracts information from a bowtie index

SYNOPSIS

       bowtie-inspect [options]* <ebwt_base>

DESCRIPTION

       <ebwt_base>
              ebwt filename minus trailing .1.ebwt/.2.ebwt

              By  default,  prints  FASTA records of the indexed nucleotide sequences to standard
              out.  With -n, just prints names.  With -s, just prints  a  summary  of  the  index
              parameters and sequences.  With -e, preserves colors if applicable.

OPTIONS

       --large-index
              force inspection of the 'large' index, even if a 'small' one is present.

       -a/--across <int>
              Number of characters across in FASTA output (default: 60)

       -n/--names
              Print reference sequence names only

       -s/--summary
              Print summary incl. ref names, lengths, index properties

       -e/--ebwt-ref
              Reconstruct reference from ebwt (slow, preserves colors)

       -v/--verbose
              Verbose output (for debugging)

       -h/--help
              print detailed description of tool and its options

       --help print this usage message

       64-bit Built on lgw01-11 Thu Nov 26 11:13:31 UTC 2015 Compiler: gcc version 5.2.1 20151123
       (Ubuntu 5.2.1-25ubuntu1) Options: -O3  -Wl,--hash-style=both  -D_FORTIFY_SOURCE=2  -g  -O2
       -fstack-protector-strong -Wformat -Werror=format-security  -g -O2 -fstack-protector-strong
       -Wformat -Werror=format-security  -Wl,-Bsymbolic-functions -Wl,-z,relro Sizeof {int, long,
       long long, void*, size_t, off_t}: {4, 8, 8, 8, 8, 8}