xenial (1) bowtie2-inspect-l.1.gz

NAME

       bowtie2-inspect-l - extracts information from a bowtie2 index

SYNOPSIS

       bowtie2-inspect [options]* <bt2_base>

DESCRIPTION

       Bowtie 2 version 2.2.6 by Ben Langmead (langmea@cs.jhu.edu, www.cs.jhu.edu/~langmea)

       <bt2_base>
              bt2 filename minus trailing .1.bt2l/.2.bt2l

              By  default,  prints  FASTA records of the indexed nucleotide sequences to standard out.  With -n,
              just prints names.  With -s, just prints a summary of the index parameters  and  sequences.   With
              -e, preserves colors if applicable.

OPTIONS

       -a/--across <int>
              Number of characters across in FASTA output (default: 60)

       -n/--names
              Print reference sequence names only

       -s/--summary
              Print summary incl. ref names, lengths, index properties

       -e/--bt2-ref
              Reconstruct reference from .bt2l (slow, preserves colors)

       -v/--verbose
              Verbose output (for debugging)

       -h/--help
              print detailed description of tool and its options

       --help print this usage message