NAME

       bp_seqcut.pl

USAGE

        bp_seqcut.pl [options -h,-s,-e,-f,-w] <FILES>...
        bp_seqcut.pl [options -h,-f,-w] s-e <FILES>...

          -h this help message
          -s which residue to start cutting on
          -e which residue to finish cutting on
          -f format of the files, defaults to FASTA but you can specify anything supported by SeqIO from BioPerl
          -w hard wrap width, this might not be supported depending on which format you are using

Description

       A script to cut FASTA sequences with a given range `fastacut -s 1 -e 10 *.fasta` or
       `fastacut 1-10 *.fasta`.  This is just a convenience wrapper around the Bio::SeqIO module.
       Useful if you wish to trim out a section of an alignment to build a profile of a specific
       region of sequence.

AUTHOR

       Matt Oates - Matt.Oates@bristol.ac.uk

FEEDBACK

   Mailing Lists
       User feedback is an integral part of the evolution of this and other Bioperl modules. Send
       your comments and suggestions preferably to the Bioperl mailing list.  Your participation
       is much appreciated.

         bioperl-l@bioperl.org                  - General discussion
         http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their
       resolution. Bug reports can be submitted via email or the web:

         https://github.com/bioperl/bioperl-live/issues

EDIT HISTORY

       2010-11-22 - Matt Oates      First features added.

DEPENDANCY Getopt::Long Used to parse command line options. Pod::Usage Used for usage and help

       output. Bio::SeqIO Used to cut up sequences and parse FASTA.