xenial (1) change_paired_read_orientation.1p.gz

Provided by: grinder_0.5.4-1_all bug

NAME
       change_paired_read_orientation - Change the orientation of paired-end reads in a FASTA file


DESCRIPTION
       Reverse the orientation, i.e. reverse-complement each right-hand paired-end read (ID ending in /2) in a
       FASTA file.


REQUIRED ARGUMENTS
       <in_fasta>
           FASTA file containing the reads to re-orient.

       <out_fasta>
           Output FASTA file where to write the reads.


       Copyright 2009-2012 Florent ANGLY <florent.angly@gmail.com>

       Grinder is free software: you can redistribute it and/or modify it under the terms of the GNU General
       Public License (GPL) as published by the Free Software Foundation, either version 3 of the License, or
       (at your option) any later version.  Grinder is distributed in the hope that it will be useful, but
       WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
       PURPOSE.  See the GNU General Public License for more details.  You should have received a copy of the
       GNU General Public License along with Grinder.  If not, see <http://www.gnu.org/licenses/>.


BUGS
       All complex software has bugs lurking in it, and this program is no exception.  If you find a bug, please
       report it on the SourceForge Tracker for Grinder:
       <http://sourceforge.net/tracker/?group_id=244196&atid=1124737>

       Bug reports, suggestions and patches are welcome. Grinder's code is developed on Sourceforge
       (<http://sourceforge.net/scm/?type=git&group_id=244196>) and is under Git revision control. To get
       started with a patch, do:

          git clone git://biogrinder.git.sourceforge.net/gitroot/biogrinder/biogrinder