NAME

       mat2dof - Matrix to degrees of freedom

SYNOPSIS

       mat2dof [options] < matrix

DESCRIPTION

       Convert transformation matrix to degrees of freedom

OPTIONS

   Global Toolkit Options (these are shared by all CMTK tools)
       --help
            Write list of basic command line options to standard output.

       --help-all
            Write complete list of basic and advanced command line options to standard output.

       --wiki
            Write list of command line options to standard output in MediaWiki markup.

       --man
            Write man page source in 'nroff' markup to standard output.

       --version
            Write toolkit version to standard output.

       --echo
            Write the current command line to standard output.

       --verbose-level <integer>
            Set verbosity level.

       --verbose, -v
            Increment verbosity level by 1 (deprecated; supported for backward compatibility).

       --threads <integer>
            Set maximum number of parallel threads (for POSIX threads and OpenMP).

   Input Options
       --matrix3x3, -3
            Only input upper left 3x3 submatrix.

       --transpose, -t
            Transpose input matrix.

       --pixel-size <string>
            For  matrices  in pixel space (i.e., mapping from grid index to physical coordinate),
            set image grid pixel size.  [Default: NONE]

   Transformation Modifiers
       --center <string>
            Set center x,y,z for rotation and scaling.  [Default: NONE]

       --offset <string>
            Set offset dx,dy,dz for translation.  [Default: NONE]

       --xlate <string>
            Translate result relative by given vector.  [Default: NONE]

       --inverse
            Output inverse transformation. Inversion happens after all other modifiers have  been
            applied.

   Output Options
       --output <string>, -o <string>
            Write output transformation to this file [Default: NONE]

       --list <string>
            Write  output  in list format to this archive (directory including 'registration' and
            'studylist' files).  [Default: NONE]

       --append
            Append to output file rather than create a new one and overwrite exisiting files.

AUTHORS

       Torsten Rohlfing, with contributions from Michael  P.  Hasak,  Greg  Jefferis,  Calvin  R.
       Maurer, Daniel B. Russakoff, and Yaroslav Halchenko

LICENSE

       http://www.fsf.org/licensing/licenses/gpl.html

BUGS

       Report bugs at http://nitrc.org/projects/cmtk/

ACKNOWLEDGMENTS

       CMTK is developed with support from the NIAAA under Grant AA021697, National Consortium on
       Alcohol and Neurodevelopment in Adolescence (N-CANDA): Data  Integration  Component.  From
       April  2009  through September 2011, CMTK development and maintenance was supported by the
       NIBIB under Grant EB008381.