xenial (1) cmtk-streamxform.1.gz

NAME

       streamxform - Apply coordinate transformation to point coordinates from text stream.

SYNOPSIS

       streamxform XformList

DESCRIPTION

       An  ASCII-format  list  of  point coordinates is read from standard input and a user-provided sequence of
       coordinate transformations (each optionally inverted) is applied to them. The transformed points are then
       written to standard output.

OPTIONS

   Global Toolkit Options (these are shared by all CMTK tools)
       --help
            Write list of basic command line options to standard output.

       --help-all
            Write complete list of basic and advanced command line options to standard output.

       --wiki
            Write list of command line options to standard output in MediaWiki markup.

       --man
            Write man page source in 'nroff' markup to standard output.

       --version
            Write toolkit version to standard output.

       --echo
            Write the current command line to standard output.

       --verbose-level <integer>
            Set verbosity level.

       --verbose, -v
            Increment verbosity level by 1 (deprecated; supported for backward compatibility).

       --threads <integer>
            Set maximum number of parallel threads (for POSIX threads and OpenMP).

   Transformation Options
       --affine-only
            Apply  only  the affine component of each transformation (or its inverse, if specified) in the given
            series, even if the actual transformation is nonrigid.

       --inversion-tolerance <double>
            Numerical tolerance of B-spline  inversion  in  mm.  Smaller  values  will  lead  to  more  accurate
            inversion, but may increase failure rate.  [Default: 1e-08]

   Output Options
       --separator <string>
            Field  separator  -  this  string or character is used to separate x, y, and z coordinates from each
            other, and z from the remainder of every line.  [Default:   ]

       --precision <integer>
            Floating point precision for output file.  [Default: 9]

   Image Space Options
       --source-image <string>
            Set source image of the transformation (i.e., the image that the transformation maps points FROM) to
            correct for differences in orientation and coordinate space.  [Default: NONE]

       --target-image <string>
            Set  target  image of the transformation (i.e., the image that the transformation maps points TO) to
            correct for differences in orientation and coordinate space.  [Default: NONE]

AUTHORS

       Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R.  Maurer,  Daniel  B.
       Russakoff, and Yaroslav Halchenko

LICENSE

       http://www.fsf.org/licensing/licenses/gpl.html

BUGS

       Report bugs at http://nitrc.org/projects/cmtk/

ACKNOWLEDGMENTS

       CMTK  is  developed  with support from the NIAAA under Grant AA021697, National Consortium on Alcohol and
       Neurodevelopment in Adolescence (N-CANDA): Data Integration Component. From April 2009 through  September
       2011, CMTK development and maintenance was supported by the NIBIB under Grant EB008381.