NAME

       createChemistryHeader.py   -   Create  a  SAM  header  with  PacBio  sequencing  chemistry
       information

DESCRIPTION

       usage: getChemistryHeader.py [-h] [--debug] --bas_files BAS_FILES

       [BAS_FILES ...]
              input_alignment_file output_header_file

       createChemistryHeader creates a SAM header that contains the chemistry information used by
       Quiver.

   positional arguments:
       input_alignment_file
              A SAM or BAM file produced by BLASR.

       output_header_file
              Name  of the SAM or BAM header file that will be created with chemistry information
              loaded.

   optional arguments:
       -h, --help
              show this help message and exit

       --debug
              Output detailed log information. (default: False)

       --bas_files BAS_FILES [BAS_FILES ...]
              The  bas  or  bax  files  containing  the  reads   that   were   aligned   in   the
              input_alignment_file. Also can be a fofn of bas or bax files. (default: None)