NAME

       csg_map - Part of the VOTCA package

SYNOPSIS

       csg_map [OPTION] [OPTIONPARAMETERS]

DESCRIPTION

       Map  a  reference  trajectory to a coarse-grained trajectory.  This program can be used to
       map a whole trajectory or to create an initial  configuration  for  a  coarse-grained  run
       only.

       Please visit the program site at __http://www.votca.org__.

OPTIONS

       Allowed options:

       -h [ --help ]
              produce this help message

       --top arg
              atomistic topology file

       --out arg
              output file for coarse-grained trajectory

       Mapping options:

       --cg arg
              coarse graining mapping definitions (xml-file)

       --map-ignore arg
              list of molecules to ignore separated by ;

       --no-map
              disable mapping and act on original trajectory

       Trajectory options:

       --trj arg
              atomistic trajectory file

       --begin arg (=0)
              skip frames before this time

       --first-frame arg (=0)
              start with this frame

       --nframes arg
              process the given number of frames

AUTHORS

       Written and maintained by the VOTCA Development Team <devs@votca.org>

       This  Manual  Page  was  converted  from  t2t  format  to  the  this  format  by  txt2tags
       (http://txt2tags.org) !  The t2t file was extracted  from  'csg_map  --help'  by  help2t2t
       (version 1.2.4 )

COPYRIGHT

       Copyright 2009-2011 The VOTCA Development Team (http://www.votca.org)

       Licensed  under the Apache License, Version 2.0 (the "License"); you may not use this file
       except in compliance with the License.  You may obtain a copy of the License at

           http://www.apache.org/licenses/LICENSE-2.0

       Unless required by applicable law or agreed to in writing, software distributed under  the
       License  is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND,
       either  express  or  implied.   See  the  License  for  the  specific  language  governing
       permissions and limitations under the License.