NAME

       domainrep - Reorder DCF file to identify representative structures.

SYNOPSIS

       domainrep -dcfinfile infile -node list -dcfoutfile outfile

       domainrep -help

DESCRIPTION

       domainrep is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”).
       It is part of the "Protein:3D Structure" command group(s).

OPTIONS

   Input section
       -dcfinfile infile
           This option specifies the name of DCF file (domain classification file) (input). A 'domain
           classification file' contains classification and other data for domains from SCOP or CATH, in DCF
           format (EMBL-like). The files are generated by using SCOPPARSE and CATHPARSE. Domain sequence
           information can be added to the file by using DOMAINSEQS.

   Required section
       -node list
           This option specifies the node fore reordering the file. Reordering can be done for any specified
           node in the SCOP or CATH hierarchies. For example by selecting 'Class' entries belonging to the same
           Class will be reordered in turn. Default value: 1

   Output section
       -dcfoutfile outfile
           This option specifies the name of DCF file (domain classification file) (output). A 'domain
           classification file' contains classification and other data for domains from SCOP or CATH, in DCF
           format (EMBL-like). The files are generated by using SCOPPARSE and CATHPARSE. Domain sequence
           information can be added to the file by using DOMAINSEQS. Default value: test.scop

BUGS

       Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to
       the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

SEE ALSO

       domainrep is fully documented via the tfm(1) system.

AUTHOR

       Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
           Wrote the script used to autogenerate this manual page.

COPYRIGHT

       This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be
       redistributed under the same terms as EMBOSS itself.

DOMALIGN 0.1.0+20100721                            08/11/2010                                      DOMAINREP(1e)