NAME

       edialign - Local multiple alignment of sequences

SYNOPSIS

       edialign -sequences seqset -nucmode list -revcomp boolean [-overlapw selection] [-linkage list]
                [-maxfragl integer] -fragmat boolean -fragsim integer [-itscore boolean] [-threshold float]
                -mask boolean -dostars boolean -starnum integer -outfile outfile -outseq seqoutall

       edialign -help

DESCRIPTION

       edialign is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It
       is part of the "Alignment:Multiple" command group(s).

OPTIONS

   Input section
       -sequences seqset

   Additional section
       -nucmode list
           Nucleic acid sequence alignment mode (simple, translated or mixed) Default value: n

       -revcomp boolean
           Default value: N

       -overlapw selection
           By default overlap weights are used when Nseq =<35 but you can set this to 'yes' or 'no' Default
           value: default (when Nseq =< 35)

       -linkage list
           Clustering method to construct sequence tree (UPGMA, minimum linkage or maximum linkage) Default
           value: UPGMA

       -maxfragl integer
           Default value: 40

       -fragmat boolean
           Default value: N

       -fragsim integer
           Default value: 4

       -itscore boolean
           Default value: N

       -threshold float
           Default value: 0.0

   Output section
       -mask boolean
           Default value: N

       -dostars boolean
           Default value: N

       -starnum integer
           Default value: 4

       -outfile outfile

       -outseq seqoutall

BUGS

       Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to
       the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

SEE ALSO

       edialign is fully documented via the tfm(1) system.

AUTHOR

       Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
           Wrote the script used to autogenerate this manual page.

COPYRIGHT

       This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be
       redistributed under the same terms as EMBOSS itself.

EMBOSS 6.4.0                                       05/11/2012                                       EDIALIGN(1e)