xenial (1) fastaq-add_indels.1.gz

NAME

       fastaq_add_indels - Deletes or inserts bases at given position(s)

DESCRIPTION

       usage: fastaq_add_indels [options] <infile> <outfile>

       Deletes or inserts bases at given position(s)

   positional arguments:
       infile Name of input file

       outfile
              Name of output file

   optional arguments:
       -h, --help
              show this help message and exit

       -d Name:start:bases, --delete Name:start:bases
              Delete the given bases from the given sequence. Format same as samtools view: name:start-end. This
              option can be used multiple times (once for each region to delete).  Overlapping  coords  will  be
              merged before deleting

       --delete_range P,start,step
              Deletes  bases  starting  at  position  P  in  each  sequence  of  the input file. Deletes start +
              (n-1)*step bases from sequence n.

       -i Name:start:bases, --insert Name:start:bases
              Insert a random string of bases at the given  position.   Format  is  name:position:number_to_add.
              Bases are added after the position. This option can be used multiple times

       --insert_range P,start,step
              Inserts random bases starting after position P in each sequence of the input file. Inserts start +
              (n-1)*step bases into sequence n.