NAME

       fastaq_capillary_to_pairs - Converts file of capillary reads to paired and unpaired files

DESCRIPTION

       usage: fastaq_capillary_to_pairs <infile> <outfiles prefix>

       Given  a file of capillary reads, makes an interleaved file of read pairs (where more than read from same
       ligation, takes the longest read) and a file of unpaired reads. Replaces the .p1k/.q1k part of read names
       to denote fwd/rev reads with /1 and /2

   positional arguments:
       infile Name of input fasta/q file

       outfiles prefix
              Prefix of output files

   optional arguments:
       -h, --help
              show this help message and exit

fastaq 3.11.1                                     February 2016                     FASTAQ-CAPILLARY_TO_PAIRS(1)