NAME

       fastaq_chunker - Splits sequences into equal sized chunks

DESCRIPTION

       usage: fastaq_chunker [options] <infile> <out> <chunk size> <tolerance>

       Splits  a multi sequence file into separate files. Splits sequences into chunks of a fixed size. Aims for
       chunk_size chunks in each file, but allows  a  little  extra,  so  chunk  can  be  up  to  (chunk_size  +
       tolerance), to prevent tiny chunks made from the ends of sequences

   positional arguments:
       infile Name of input file to be split

       out    Prefix of output file. If --onefile used, then name of single output file

       chunk_size
              Size of each chunk

       tolerance
              Tolerance allowed in chunk size

   optional arguments:
       -h, --help
              show this help message and exit

       --onefile
              Output all the sequences in one file

       --skip_all_Ns
              Do not output any sequence that consists of all Ns

fastaq 3.11.1                                     February 2016                                FASTAQ-CHUNKER(1)