NAME

       fastaq_search_for_seq - Find all exact matches to a string (and its reverse complement)

DESCRIPTION

       usage: fastaq_search_for_seq [options] <infile> <outfile> <search_string>

       Searches  for  an  exact  match  on a given string and its reverse complement, in every sequence of input
       sequence file. Case insensitive. Guaranteed to find all hits

   positional arguments:
       infile Name of input file

       outfile
              Name of outputfile. Tab-delimited output: sequence name, position, strand

       search_string
              String to search for in the sequences

   optional arguments:
       -h, --help
              show this help message and exit

fastaq 3.11.1                                     February 2016                         FASTAQ-SEARCH_FOR_SEQ(1)