NAME

       gmx-dump - Make binary files human readable

SYNOPSIS

          gmx dump [-s [<.tpr>]] [-f [<.xtc/.trr/...>]] [-e [<.edr>]]
                   [-cp [<.cpt>]] [-p [<.top>]] [-mtx [<.mtx>]] [-om [<.mdp>]]
                   [-[no]nr] [-[no]sys]

DESCRIPTION

       gmx  dump  reads  a  run  input file (.tpr), a trajectory (.trr/.xtc//tng), an energy file
       (.edr) or a checkpoint file (.cpt) and prints  that  to  standard  output  in  a  readable
       format.  This program is essential for checking your run input file in case of problems.

       The  program can also preprocess a topology to help finding problems.  Note that currently
       setting GMXLIB is the only way to customize directories used for searching include files.

OPTIONS

       Options to specify input files:

       -s [<.tpr>] (topol.tpr) (Optional)
              Portable xdr run input file

       -f [<.xtc/.trr/...>] (traj.xtc) (Optional)
              Trajectory: xtc trr cpt gro g96 pdb tng

       -e [<.edr>] (ener.edr) (Optional)
              Energy file

       -cp [<.cpt>] (state.cpt) (Optional)
              Checkpoint file

       -p [<.top>] (topol.top) (Optional)
              Topology file

       -mtx [<.mtx>] (hessian.mtx) (Optional)
              Hessian matrix

       Options to specify output files:

       -om [<.mdp>] (grompp.mdp) (Optional)
              grompp input file with MD parameters

       Other options:

       -[no]nr (yes)
              Show index numbers in output (leaving them out makes comparison easier, but creates
              a useless topology)

       -[no]sys (no)
              List  the  atoms  and  bonded interactions for the whole system instead of for each
              molecule type

KNOWN ISSUES

       • Position restraint output from -sys -s is broken

SEE ALSO

       gmx(1)

       More information about GROMACS is available at <http://www.gromacs.org/>.

COPYRIGHT

       2015, GROMACS development team