NAME

       gt-ltrclustering - Cluster features of LTRs.

SYNOPSIS

       gt ltrclustering [option ...] indexname [GFF3_file ...]

DESCRIPTION

       -psmall [value]
           specify how many percent of the smaller sequence a match needs to cover in order to
           cluster the two sequences of the match. (default: 0)

       -plarge [value]
           specify how many percent of the larger sequence a match needs to cover in order to
           cluster the two sequences of the match. (default: 0)

       -o [filename]
           redirect output to specified file (default: undefined)

       -gzip [yes|no]
           write gzip compressed output file (default: no)

       -bzip2 [yes|no]
           write bzip2 compressed output file (default: no)

       -force [yes|no]
           force writing to output file (default: no)

       -help
           display help and exit

       -version
           display version information and exit

REPORTING BUGS

       Report bugs to <gt-users@genometools.org>.