NAME

       gt-matchtool - Parse match formats and/or invoke matching tools.

SYNOPSIS

       gt matchtool [option ...]

DESCRIPTION

       -type [...]
           choose match file format: OPENMATCH: open match format, e.g. vmatch BLASTOUT : tabular
           BLAST output (-m 8) BLASTALLP: invoke BLASTALL with blastp BLASTALLN: invoke BLASTALL
           with blastn BLASTP : invoke blastp BLASTN : invoke blastn LAST : invoke LAST SW : use
           Smith-Waterman (default: OPENMATCH)

       -matchfile [filename]
           set input file name (default: undefined)

       -db [filename]
           set database file name (default: undefined)

       -swminlen [value]
           set minimum required alignment length (for Smith-Waterman alignment) (default: 10)

       -swmaxedist [value]
           set maximum allowed edit distance (for Smith-Waterman alignment) (default: 0)

       -query [filename]
           set query file name (default: undefined)

       -help
           display help and exit

       -version
           display version information and exit

REPORTING BUGS

       Report bugs to <gt-users@genometools.org>.