Provided by: libpwiz-tools_3.0.9393-1_amd64 
NAME
idconvert — Convert mass spectrometry identification file formats.
SYNOPSIS
idconvert [options] [filemasks]
DESCRIPTION
This manual page documents briefly the idconvert software shipped within the libpwiz-tools package. This
program allows one to convert mass spectrometry protein identification data files from one format to
another.
OPTIONS
-v | --verbose
Display detailed processing progress information.
-f | --filelist filename
Uses the contents of filename which lists filenames.
-o | --outdir dir
Set the output directory ('-' for stdout) to dir. By default, the output directory is '.' (that
is, the current working directory).
-c | --config filename
Set the configuration file to filename.
-e | --ext ext
Set the extension of the output files to ext. Can be mzid or pepXML or txt.
--mzIdentML
Write mzIdentML format (default).
--pepXML Write pepXML format.
--text Write hierarchical text format.
EXAMPLES
Convert sequest.pepXML to sequest.mzid
idconvert sequest.pepXML
Convert mascot.mzid to mascot.pepXML
idconvert mascot.mzid --pepXML
Use a configuration file
idconvert xtandem.pep.xml -c config.txt
RETURN VALUE
The number of failed files.
AUTHOR
Filippo Rusconi <lopippo@debian.org> This manual page was written by Filippo Rusconi <lopippo@debian.org> (initial writing 05 december 2013). Permission is granted to copy, distribute and/or modify this document under the terms of the GNU General Public License, Version 3, published by the Free Software Foundation. On a Debian system the complete text of the GNU General Public License version 3 can be found in the file `/usr/share/common-licenses/GPL-3'. IDCONVERT (1)