NAME

       khmer - k-mer counting, filtering and graph traversal FTW!

       khmer is a library and toolkit for doing k-mer-based dataset analysis and transformations

SYNOPSIS

       khmer <prog_name> [options] args

       eg.

       khmer load-into-counting -x 1e8 -k 20 reads.ct reads.fa.gz

USAGE

       This  manpage  only  describes the khmer wrapper script. To find out about the software and how to use it
       please see /usr/share/doc/khmer or else http://khmer.readthedocs.org/.

       On Debian/Ubuntu, package maintainers avoid putting large collections of scripts directly into the system
       PATH. Rather, a single wrapper script is used to launch the script you want  to  use;  therefore  if  the
       khmer  instructions  say to run load-into-counting.py ...whatever... you need to prefix this command with
       khmer. Furthermore, the .py extension may be omitted, resulting in a command of the format shown above.

       If you don´t like this, simply add /usr/lib/khmer/bin to your personal PATH.

AUTHOR

       This wrapper and manpage were written by Tim Booth, who takes no credit for khmer itself.

khmer project                                     February 2016                                         KHMER(1)