NAME

       kogalign.pl -- produce (untested) alignments from cds files

SYNOPSIS

       kogalign.pl --kogfile <kogdata> <output> <input1> <input2> [<input3> ...]  kogalign.pl
       --kogfile <kogdata> <alignment.seq>

OPTIONS The kogalign.pl <aligment.seq> execution style writes results to align.kogaligned

       The --kogfile option is necessary.