NAME

       last-dotplot - make a dotplot, a.k.a. Oxford Grid, of alignments in LAST tabular format

SYNOPSIS

       last-dotplot --help
       last-dotplot [options] maf-or-tab-alignments dotplot.png
       last-dotplot [options] maf-or-tab-alignments dotplot.gif
       ...

DESCRIPTION

       Draw a dotplot of pair-wise sequence alignments in MAF or tabular format.

OPTIONS

       -h, --help
              show this help message and exit

       -1 PATTERN, --seq1=PATTERN
              which sequences to show from the 1st genome

       -2 PATTERN, --seq2=PATTERN
              which sequences to show from the 2nd genome

       -x WIDTH, --width=WIDTH
              maximum width in pixels (default: 1000)

       -y HEIGHT, --height=HEIGHT
              maximum height in pixels (default: 1000)

       -f FILE, --fontfile=FILE
              TrueType or OpenType font file

       -s SIZE, --fontsize=SIZE
              TrueType or OpenType font size (default: 11)

       -c COLOR, --forwardcolor=COLOR
              color for forward alignments (default: red)

       -r COLOR, --reversecolor=COLOR
              color for reverse alignments (default: blue)

              Unsequenced gap options:

       --gap1=FILE
              read genome1 unsequenced gaps from agp or gap file

       --gap2=FILE
              read genome2 unsequenced gaps from agp or gap file

       --bridged-color=COLOR
              color for bridged gaps (default: yellow)

       --unbridged-color=COLOR
              color for unbridged gaps (default: pink)