NAME

       macs2_bdgopt - Model-based Analysis for ChIP-Sequencing

DESCRIPTION

       usage: macs2 bdgopt [-h] -i IFILE [-m {multiply,add,p2q}]

       [-p [EXTRAPARAM [EXTRAPARAM ...]]] [--outdir OUTDIR] -o
              OFILE

   optional arguments:
       -h, --help
              show this help message and exit

       -i IFILE, --ifile IFILE
              MACS score in bedGraph. Note: this must be a bedGraph file covering the ENTIRE genome. REQUIRED

       -m {multiply,add,p2q}, --method {multiply,add,p2q}
              Method  to modify the score column of bedGraph file.  Available choices are: multiply, add or p2q.
              1) multiply, the EXTRAPARAM is required and will be multiplied to the score column. If you  intend
              to  divide  the  score  column  by  X,  use  value of 1/X as EXTRAPARAM. 2) add, the EXTRAPARAM is
              required and will be added to the score column. If you intend to subtract the score column  by  X,
              use  value  of  -X as EXTRAPARAM. 3) p2q, this will convert p-value scores to q-value scores using
              Benjamini-Hochberg process.  The EXTRAPARAM is not required. This method assumes  the  scores  are
              -log10 p-value from MACS2. Any other types of score will cause unexpected errors.

       -p [EXTRAPARAM [EXTRAPARAM ...]], --extra-param [EXTRAPARAM [EXTRAPARAM ...]]
              The extra parameter for METHOD. Check the detail of -m option.

       --outdir OUTDIR
              If  specified  all  output  files  will be written to that directory. Default: the current working
              directory

       -o OFILE, --ofile OFILE
              Output BEDGraph filename.

macs2_bdgopt 2.1.0.20151222                       February 2016                                  MACS2_BDGOPT(1)