Provided by: macs_2.1.0.20151222-1_amd64 
NAME
macs2_bdgopt - Model-based Analysis for ChIP-Sequencing
DESCRIPTION
usage: macs2 bdgopt [-h] -i IFILE [-m {multiply,add,p2q}]
[-p [EXTRAPARAM [EXTRAPARAM ...]]] [--outdir OUTDIR] -o
OFILE
optional arguments:
-h, --help
show this help message and exit
-i IFILE, --ifile IFILE
MACS score in bedGraph. Note: this must be a bedGraph file covering the ENTIRE genome. REQUIRED
-m {multiply,add,p2q}, --method {multiply,add,p2q}
Method to modify the score column of bedGraph file. Available choices are: multiply, add or p2q.
1) multiply, the EXTRAPARAM is required and will be multiplied to the score column. If you intend
to divide the score column by X, use value of 1/X as EXTRAPARAM. 2) add, the EXTRAPARAM is
required and will be added to the score column. If you intend to subtract the score column by X,
use value of -X as EXTRAPARAM. 3) p2q, this will convert p-value scores to q-value scores using
Benjamini-Hochberg process. The EXTRAPARAM is not required. This method assumes the scores are
-log10 p-value from MACS2. Any other types of score will cause unexpected errors.
-p [EXTRAPARAM [EXTRAPARAM ...]], --extra-param [EXTRAPARAM [EXTRAPARAM ...]]
The extra parameter for METHOD. Check the detail of -m option.
--outdir OUTDIR
If specified all output files will be written to that directory. Default: the current working
directory
-o OFILE, --ofile OFILE
Output BEDGraph filename.