NAME

       mapMers-depth - report information about mapping kmers to sequences

SYNOPSIS

       mapMers-depth {-count|-depth|-stats} -mers MERYL -m MERSIZE -seq IN.FASTA

OPTIONS

   Modes of operation
       For sequence ordinal 's' and position in that sequence 'p':

       -count reports the count (c) of the single kmer that starts at position (p).

              Format: 's p c'

       -depth reports the number (n) of kmers that span position (p).

              Format: 's p n'

       -stats reports  the  minimum  (m), maximum (M), and average (a) count of all mers that span position (p).
              also reports total count (t) and number of kmers (n)

              Format: 's p m M a t n'

   General
       -m MERSIZE

       -mers MERYL
              meryl(1) database

       -seq IN.FASTA
              fasta input sequence

SEE ALSO

       meryl(1), mapMers(1)

mapMers-depth 0~20150520+2004                       May 2015                                    MAPMERS-DEPTH(1)