NAME

       mia-2dfluid - Fluid dynamic 2D registration

SYNOPSIS

       mia-2dfluid -i <in-image> -r <ref-image> [options]

DESCRIPTION

       mia-2dfluid  This  program is used for non-rigid registration based on fluid dynamics. It uses SSD as the
       sole registration criterion.

OPTIONS

   File-IO
              -i --in-image=(input, required); io
                     input (test) image to be registered  For supported file types see PLUGINS:2dimage/io

              -r --ref-image=(input, required); io
                     reference image  For supported file types see PLUGINS:2dimage/io

              -o --out-transformation=(output); io
                     output  transformation  comprising  the  registration   For  supported   file   types   see
                     PLUGINS:2dvf/io

              -d --out-image=(output); io
                     output  image  deformed  according  to  the  transformation   For  supported file types see
                     PLUGINS:2dimage/io

   Help & Info
              -V --verbose=warning
                     verbosity of output, print  messages  of  given  level  and  higher  priorities.  Supported
                     priorities starting at lowest level are:
                        info ‐ Low level messages
                        trace ‐ Function call trace
                        fail ‐ Report test failures
                        warning ‐ Warnings
                        error ‐ Report errors
                        debug ‐ Debug output
                        message ‐ Normal messages
                        fatal ‐ Report only fatal errors

                 --copyright
                     print copyright information

              -h --help
                     print this help

              -? --usage
                     print a short help

                 --version
                     print the version number and exit

   Processing
                 --threads=-1
                     Maxiumum  number  of  threads to use for processing,This number should be lower or equal to
                     the number of logical processor cores in the machine. (-1:  automatic  estimation).Maxiumum
                     number  of threads to use for processing,This number should be lower or equal to the number
                     of logical processor cores in the machine. (-1: automatic estimation).

   Registration parameters
              -m --mgstart=16
                     multigrid start sizemultigrid start size

              -e --epsilon=0.001
                     optimization breaking conditionoptimization breaking condition

                 --mu=1
                     elasticity parameterelasticity parameter

                 --lambda=1
                     elasticity parameterelasticity parameter

                 --elastic
                     use elastic registration

PLUGINS: 2dimage/io

       bmp       BMP 2D-image input/output support

                     Recognized file extensions:  .BMP, .bmp

                     Supported element types:
                       binary data, unsigned 8 bit, unsigned 16 bit

       datapool  Virtual IO to and from the internal data pool

                     Recognized file extensions:  .@

       dicom     2D image io for DICOM

                     Recognized file extensions:  .DCM, .dcm

                     Supported element types:
                       signed 16 bit, unsigned 16 bit

       exr       a 2dimage io plugin for OpenEXR images

                     Recognized file extensions:  .EXR, .exr

                     Supported element types:
                       unsigned 32 bit, floating point 32 bit

       jpg       a 2dimage io plugin for jpeg gray scale images

                     Recognized file extensions:  .JPEG, .JPG, .jpeg, .jpg

                     Supported element types:
                       unsigned 8 bit

       png       a 2dimage io plugin for png images

                     Recognized file extensions:  .PNG, .png

                     Supported element types:
                       binary data, unsigned 8 bit, unsigned 16 bit

       raw       RAW 2D-image output support

                     Recognized file extensions:  .RAW, .raw

                     Supported element types:
                       binary data, signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit,
                       unsigned 32 bit, floating point 32 bit, floating point 64 bit

       tif       TIFF 2D-image input/output support

                     Recognized file extensions:  .TIF, .TIFF, .tif, .tiff

                     Supported element types:
                       binary data, unsigned 8 bit, unsigned 16 bit, unsigned 32 bit

       vista     a 2dimage io plugin for vista images

                     Recognized file extensions:  .V, .VISTA, .v, .vista

                     Supported element types:
                       binary data, signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit,
                       unsigned 32 bit, floating point 32 bit, floating point 64 bit

PLUGINS: 2dvf/io

       datapool  Virtual IO to and from the internal data pool

                     Recognized file extensions:  .@

       exr       a 2dvf io plugin for OpenEXR vfs

                     Recognized file extensions:  .EXR, .exr

                     Supported element types:
                       unsigned 32 bit, floating point 32 bit

       vista     a 2d vector field io plugin for vista

                     Recognized file extensions:  .V, .VF, .v, .vf

                     Supported element types:
                       floating point 32 bit

EXAMPLE

       Register image  test.v  to  image  ref.v  and  write  the  deformation  vector  field  regfield.v.  Start
       registration at the smallest size above 16 pixel.

       mia-2dfluid -i test.v -r ref.v -o regfield.v -s 16

AUTHOR(s)

       Gert Wollny

COPYRIGHT

       This  software is Copyright (c) 1999‐2015 Leipzig, Germany and Madrid, Spain.  It comes  with  ABSOLUTELY
       NO WARRANTY  and  you  may redistribute it under the terms of the GNU GENERAL PUBLIC  LICENSE  Version  3
       (or later). For more information run the program with the option '--copyright'.

USER COMMANDS                                        v2.2.7                                       mia-2dfluid(1)