NAME

       mia-2dmyoseries-dice - Evaluate the dice index between segmentations.

SYNOPSIS

       mia-2dmyoseries-dice -i <input> [options]

DESCRIPTION

       mia-2dmyoseries-dice  This  program  is  used  to  evaluate  the  per-frame  dice index of
       segmented regions of an image with respect to the segmentation of a reference  frame  from
       the same series.

OPTIONS

              -i --input=(input, required); string
                     original segmentation set

              -k --skip=2
                     images  to  skip  atthe  bgin  of the seriesimages to skip atthe bgin of the
                     series

              -r --reference=20
                     reference imagereference image

   Help & Info
              -V --verbose=warning
                     verbosity of output, print messages of given level  and  higher  priorities.
                     Supported priorities starting at lowest level are:
                        info ‐ Low level messages
                        trace ‐ Function call trace
                        fail ‐ Report test failures
                        warning ‐ Warnings
                        error ‐ Report errors
                        debug ‐ Debug output
                        message ‐ Normal messages
                        fatal ‐ Report only fatal errors

                 --copyright
                     print copyright information

              -h --help
                     print this help

              -? --usage
                     print a short help

                 --version
                     print the version number and exit

   Processing
                 --threads=-1
                     Maxiumum number of threads to use for processing,This number should be lower
                     or equal to the number of logical  processor  cores  in  the  machine.  (-1:
                     automatic  estimation).Maxiumum number of threads to use for processing,This
                     number should be lower or equal to the number of logical processor cores  in
                     the machine. (-1: automatic estimation).

EXAMPLE

       Evaluate the dice index of segmentation set segment.set with reference 30 and skipping the
       first two frames.

       mia-2dmyoseries-dice -i segment.set -r 30 -k 2

AUTHOR(s)

       Gert Wollny

COPYRIGHT

       This software is Copyright (c) 1999‐2015 Leipzig, Germany and  Madrid,  Spain.   It  comes
       with   ABSOLUTELY   NO  WARRANTY  and  you  may redistribute it under the terms of the GNU
       GENERAL PUBLIC LICENSE Version 3 (or later). For more information run the program with the
       option '--copyright'.