xenial (1) mia-3dvf2transform.1.gz

Provided by: mia-tools_2.2.7-3_amd64 bug

NAME
       mia-3dvf2transform - Convert a 3D vectorfield from a 3D transformation.


SYNOPSIS
       mia-3dvf2transform -i <in-file> -o <out-file> [options]


DESCRIPTION
       mia-3dvf2transform  Creates  a  3D  transformation  from a vector field. The input vector field is simply
       encapsulated into the transformation file format. The boundary  conditions  and  the  image  interpolator
       kernel can be set at the command line.


OPTIONS
              -i --in-file=(input, required); io
                     input transformation   For supported file types see PLUGINS:3dvf/io

              -o --out-file=(output, required); io
                     output vector field   For supported file types see PLUGINS:3dtransform/io

              -k --imgkernel=bspline:d=3
                     image interpolator kernel which is used when the transformation is applied to an imageimage
                     interpolator kernel which is used when the transformation  is  applied  to  an  image   For
                     supported plugins see PLUGINS:1d/splinekernel

              -b --imgboundary=mirror
                     Boundary  condition  applied  when the transformation is used to transform an imageBoundary
                     condition applied when the transformation is used to  transform  an  image   For  supported
                     plugins see PLUGINS:1d/splinebc

   Help & Info
              -V --verbose=warning
                     verbosity  of  output,  print  messages  of  given  level  and higher priorities. Supported
                     priorities starting at lowest level are:
                        info ‐ Low level messages
                        trace ‐ Function call trace
                        fail ‐ Report test failures
                        warning ‐ Warnings
                        error ‐ Report errors
                        debug ‐ Debug output
                        message ‐ Normal messages
                        fatal ‐ Report only fatal errors

                 --copyright
                     print copyright information

              -h --help
                     print this help

              -? --usage
                     print a short help

                 --version
                     print the version number and exit

   Processing
                 --threads=-1
                     Maxiumum number of threads to use for processing,This number should be lower  or  equal  to
                     the  number  of logical processor cores in the machine. (-1: automatic estimation).Maxiumum
                     number of threads to use for processing,This number should be lower or equal to the  number
                     of logical processor cores in the machine. (-1: automatic estimation).


PLUGINS: 1d/splinebc
       mirror    Spline interpolation boundary conditions that mirror on the boundary

                     (no parameters)

       repeat    Spline interpolation boundary conditions that repeats the value at the boundary

                     (no parameters)

       zero      Spline interpolation boundary conditions that assumes zero for values outside

                     (no parameters)


PLUGINS: 1d/splinekernel
       bspline   B-spline kernel creation , supported parameters are:

                     d = 3; int in [0, 5]
                       Spline degree.

       omoms     OMoms-spline kernel creation, supported parameters are:

                     d = 3; int in [3, 3]
                       Spline degree.


PLUGINS: 3dtransform/io
       bbs       Binary (non-portable) serialized IO of 3D transformations

                     Recognized file extensions:  .bbs

       datapool  Virtual IO to and from the internal data pool

                     Recognized file extensions:  .@

       vista     Vista storage of 3D transformations

                     Recognized file extensions:  .v, .v3dt

       xml       XML serialized IO of 3D transformations

                     Recognized file extensions:  .x3dt


PLUGINS: 3dvf/io
       cvista    obsolete 3d vector field io plugin for range compressend vista (saving not supported)

                     Recognized file extensions:  .CVF, .cvf

                     Supported element types:
                       floating point 32 bit

       datapool  Virtual IO to and from the internal data pool

                     Recognized file extensions:  .@

       vista     a 3d vector field io plugin for vista

                     Recognized file extensions:  .V, .VF, .v, .vf

                     Supported element types:
                       floating point 32 bit

       vtk       3D Vector field in- and output (experimental). No attributes are stored or read.

                     Recognized file extensions:  .VTK, .VTKVF, .vtk, .vtkvf

                     Supported element types:
                       floating point 32 bit


EXAMPLE
       Transform  the  input  vector  field field.vtk to the transformation trans.v3df and specify zero boundary
       conditions and b-splines of degree 2 for image interpolation.

       mia-3dvf2transform -i field.vtk -o trans.v3df --imgkernel bspline:d=2 --imgboundary zero


AUTHOR(s)
       Gert Wollny


       This software is Copyright (c) 1999‐2015 Leipzig, Germany and Madrid, Spain.  It comes  with   ABSOLUTELY
       NO  WARRANTY   and   you  may redistribute it under the terms of the GNU GENERAL PUBLIC LICENSE Version 3
       (or later). For more information run the program with the option '--copyright'.