Provided by: minc-tools_2.3.00+dfsg-1build1_amd64 
NAME
mincconcat - concatenate minc files along a specific dimension
SYNOPSIS
mincconcat [<options>] <infile1>.mnc [<infile2>.mnc ...] <outfile>.mnc
DESCRIPTION
Mincconcat will concatenate a number of minc files together, producing a single output file. The
concatenation is done along a specified dimension, with the slices being sorted into ascending order.
The concatenation dimension can either be a dimension in the file, in which case coordinates for sorting
are taken directly from the input files, or it can be a new dimension and the coordinates are specified
with a command-line option.
OPTIONS
Note that options can be specified in abbreviated form (as long as they are unique) and can be given
anywhere on the command line.
General options
-2 Create a MINC 2.0 format output file.
-clobber
Overwrite an existing file.
-noclobber
Don't overwrite an existing file (default).
-verbose
Print out progress information for each chunk of data copied (default).
-quiet Do not print out progress information.
-max_chunk_size_in_kb size
Specify the maximum size of the copy buffer (in kbytes). Default is 4096 kbytes.
-filelist filename
Specify a file containing a list of input file names. If "-" is given, then file names are read
from stdin. If this option is given, then there should be no input file names specified on the
command line. Empty lines in the input file are ignored.
Output type options
-filetype
Don't do any type conversion (default).
-byte Write out 8-bit integer voxels.
-short Write out 16-bit integer voxels.
-int Write out 32-bit integer voxels.
-long Superseded by -int.
-float Write out single-precision floating point values.
-double
Write out double-precision floating point values.
-signed
Write out values as signed integers (default for short and long). Ignored for floating point
types.
-unsigned
Write out values as unsigned integers (default for byte). Ignored for floating point types.
-valid_range min max
Specifies the valid range of output voxel values in their integer representation. Default is the
full range for the type and sign. This option is ignored for floating point values.
Concatenation options
-concat_dimension name
Specifies the name of concatenation dimension. If the dimension exists in the input files, then
coordinates are taken from those files. If not, then a new dimension is created and the coordinate
for each input file is taken from command-line options. The default is to use the slowest varying
dimension of the first file.
-start start
Specifies the starting coordinate for the new dimension (default = 0.0).
-step step
Specifies the separation between voxels for the new dimension (default = 1.0).
-width width
Specifies the (constant) width of each sample along the new dimension (default = none).
-coordlist c1,c2,...
Specifies a comma-separated list of coordinates along the new dimension.
-widthlist w1,w2,...
Specifies a comma-separated list of widths along the new dimension.
-filestarts s1,s2,...
Specifies a comma-separated list of offsets to the coordinate origins for each of the files listed
on the command line. This option is useful for concatenating files along an existing dimension,
for example for concatenating multiple functional runs along a time dimension.
-check_dimensions
Check that all input files have matching sampling in world dimensions (default).
-nocheck_dimensions
Ignore any differences between input files in world dimensions sampling.
-ascending
Sort coordinates in ascending order (default).
-descending
Sort coordinates in descending order.
-interleaved
Sort slabs by their dimension coordinate, interleaving if necessary (default).
-sequential
Don't sort slabs, just concatenate them together. WARNING - this will destroy the dimension
information along the concatenating dimension, replacing the start and step with zero and one.
Generic options for all commands:
-help Print summary of command-line options and exit.
-version
Print the program's version number and exit.
EXAMPLES
To concatenate two volumes with dimensions zspace, yspace, xspace, having interleaved slices along
zspace, we can simply use
mincconcat input1.mnc input2.mnc output.mnc
If we have a bunch of compressed (yspace, xspace) images that we wish to concatenate into an evenly
spaced volume, then we can type
mincconcat input1.mnc.gz input2.mnc.gz input3.mnc.gz \
input4.mnc.gz output.mnc \
-concat_dimension zspace -start -23 -step 2
AUTHOR
Peter Neelin
COPYRIGHTS
Copyright © 1995 by Peter Neelin
$Date: 2005-07-15 17:38:08 $ MINCCONCAT(1)