xenial (1) miraSearchESTSNPs.1.gz

Provided by: mira-assembler_4.9.5-5_amd64 bug

NAME

       miraSearchESTSNPs - Pipeline to discover SNPs in ESTs from different strains

DESCRIPTION

       The  program miraSearchESTSNPs can be used for assembly of EST data from different strains (or organisms)
       and SNP detection within this assembly.  This is the former miraEST program which  was  renamed  as  many
       people got confused regarding whether to use MIRA in est mode or miraEST.

       miraSearchESTSNPs  is a pipeline that reconstructs the pristine mRNA transcript sequences gathered in EST
       sequencing projects of more than one strain, which can be a reliable basis for subsequent analysis  steps
       like  clustering  or  exon  analysis. This means that even genes that contain only one transcribed SNP on
       different alleles are first treated as different transcripts. The optional  last  step  of  the  assembly
       process  can  be  configured as a simple clusterer that can assemble transcripts containing the same exon
       sequence -- but only differ in SNP positions -- into one  consensus  sequence.  Such  SNPs  can  then  be
       analysed,  classified  and reliably assigned to their corresponding mRNA transcriptome sequence. However,
       it is important to note that miraSearchESTSNPs is an assembler and not a full blown clustering tool.

SYNOPSIS

       In version 3.9.17 this functionality is deactivated.

SEE ALSO

       A  more  extensive  documentation  is  provided  in  the  mira-doc  package   and   can   be   found   at
       /usr/share/doc/mira-assembler/DefinitiveGuideToMIRA.html.

       You can also subscribe one of the MIRA mailing lists at

              http://www.chevreux.org/mira_mailinglists.html

       After subscribing, mail general questions to the MIRA talk mailing list:

              mira_talk@freelists.org

BUGS

       To report bugs or ask for features, please use the new ticketing system at:

              http://sourceforge.net/apps/trac/mira-assembler/

AUTHOR

       The author of the mira code is Bastien Chevreux <bach@chevreux.org>

       This  manual  page  was  written by Andreas Tille <tille@debian.org> but can be freely used for any other
       distribution.