xenial (1) pymvpa2.1.gz

NAME

       pymvpa2 - command line interface for PyMVPA

SYNOPSIS

       pymvpa2   [-h]   [--version]   [--dbg]   [--dbg-channel   COMMON_DEBUG]  [--preload  PRELOAD]  [--verbose
       [COMMON_VERBOSE]]
       {info,mkds,mkevds,describe,dump,preproc,crossval,searchlight,select,atlaslabeler,exec,ofmotionqc,ttest}
       ...

DESCRIPTION

       This is the command line interface of the PyMVPA framework. Specific functionality is provided through  a
       collection of sub-commands.  Available sub-commands are:

       info:         Query various information about a PyMVPA installation.

       mkds:         Create a PyMVPA dataset from various sources.

       mkevds:       Extract (multi-sample) events from a dataset

       describe:     Describe a dataset's content

       dump:         Dump dataset components in various formats

       preproc:      Preprocess a PyMVPA dataset.

       crossval:     Cross-validation of a learner's performance

       searchlight:  Traveling ROI analysis

       select:       Select a subset of samples and/or features from a dataset

       atlaslabeler: Query atlases for anatomical labels of voxel coordinates, or their

              statistics

       exec:         Execute arbitrary Python expressions (on datasets)

       ofmotionqc:   Generate a QC plot for BOLD fMRI motion estimates from an OpenFMRI

              dataset.

       ttest:        t-test across multiple volumes against some chance level

       Detailed  usage information for individual commands is available via command-specific help options, i.e.:
       bin/pymvpa2 <command> --help

OPTIONS

       -h, --help, --help-np
              show this help message and exit. --help-np forcefully disables the use of a pager  for  displaying
              the help.

       --version
              show program's version and license information and exit

       --dbg  invoke a debugger when a crash occurs

       --dbg-channel COMMON_DEBUG
              enable debug channel (see 'info' command for available channels)

       --preload PRELOAD
              filename  of  a  custom  Python  script  that is executed prior to, and in the same session as the
              actual command. This can be used to modify the  execution  environment,  for  example  creating  a
              custom  classifier  instance.  This option can be given multiple times, and the associated scripts
              are ran in order of their appearance on the command line.

       --verbose [COMMON_VERBOSE]
              output verbosity level

AUTHOR

       Written by Michael Hanke & Yaroslav Halchenko, and numerous other contributors.

COPYRIGHT

       Copyright © 2006-2015 PyMVPA developers

       Permission is hereby granted, free of charge, to any  person  obtaining  a  copy  of  this  software  and
       associated  documentation  files (the "Software"), to deal in the Software without restriction, including
       without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense,  and/or  sell
       copies  of the Software, and to permit persons to whom the Software is furnished to do so, subject to the
       following conditions:

       The above copyright notice and this permission notice shall be included  in  all  copies  or  substantial
       portions of the Software.

       THE  SOFTWARE  IS  PROVIDED  "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT
       LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO
       EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER
       IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE  SOFTWARE  OR
       THE USE OR OTHER DEALINGS IN THE SOFTWARE.