xenial (1) subindel.1.gz

NAME

       subindel - detect short and long indels

USAGE

       subindel  -i  <SAM  file>  -g  <subread index> -o <output VCF> {-d <expected fragment distance>} {-I <max
       indel length>} {--paired-end}

   Example:
              subindel -i my_paired_end_reads.SAM -g my_index -o my_result -d 300 -I 200 --paired-end