xenial (1) transformix.1.gz

NAME

       transformix - apply geometric transform to an image

SYNOPSIS

       transformix mandatory-args [optional-args]

DESCRIPTION

       transformix applies a transform on an input image and/or generates a deformation field.  The transform is
       specified in the transform-parameter file.

OPTIONS

       Call transformix from the command line with mandatory arguments:

       -out      output directory

       -tp       transform-parameter file, only 1

       Optional extra commands:

       -in       input image to deform

       -def      file containing input-image points

              the point are transformed according to the specified transform-parameter file use  "-def  all"  to
              transform all points from the input-image, which effectively generates a deformation field.

       -jac      use "-jac all" to generate an image with the determinant of the spatial Jacobian

       -jacmat   use "-jacmat all" to generate an image with the spatial Jacobian matrix at each voxel

       -priority set the process priority to high or belownormal (Windows only)

       -threads  set the maximum number of threads of transformix
              At least one of the options "-in", "-def", "-jac", or "-jacmat" should be given.

       The  transform-parameter file must contain all the information necessary for transformix to run properly.
       That includes which transform to use, with which parameters, etc.  For a usable transform-parameter file,
       see the output of elastix.

SEE ALSO

       elastix(1)

       Check the website http://elastix.isi.uu.nl, or mail elastix.support@gmail.com.