Provided by: seqan-apps_1.4.1+dfsg-2_amd64 
NAME
tree_recon - Tree reconstruction
SYNOPSIS
tree_recon [OPTIONS] -m IN.DIST
DESCRIPTION
Reconstruct phylogenetic tree from Phylip matrix IN.DIST.
-h, --help
Displays this help message.
--version
Display version information
Input / Output:
-m, --matrix FILE
Name Phylip distance matrix file. Must contain at least three species. Valid filetype is: dist.
-o, --out-file FILE
Path to write output to. Valid filetypes are: dot and newick. Default: tree.dot.
Algorithm Options:
-b, --build METHOD
Tree building method. nj: neighbour-joining, min: UPGMA single linkage, max: UPGMA complete
linkage, avg: UPGMA average linkage, wavg: UPGMA weighted average linkage. Neighbour-joining
creates an unrooted tree. We root that tree at the least joined pair. One of nj, min, max, avg,
and wavg. Default: nj.
CONTACT AND REFERENCES
For questions or comments, contact:
Tobias Rausch <rausch@embl.de>
SeqAn Homepage:
http://www.seqan.de
VERSION
tree_recon version: 1.02 Last update July 17, 2012