NAME

       tree_recon - Tree reconstruction

       SYNOPSIS

              tree_recon [OPTIONS] -m IN.DIST

       DESCRIPTION

              Reconstruct phylogenetic tree from Phylip matrix IN.DIST.

       -h, --help

              Displays this help message.

       --version

              Display version information

              Input / Output:

       -m, --matrix FILE

              Name  Phylip  distance  matrix  file.  Must  contain  at least three species. Valid
              filetype is: dist.

       -o, --out-file FILE

              Path to write output to. Valid filetypes are: dot and newick.  Default: tree.dot.

              Algorithm Options:

       -b, --build METHOD

              Tree building method. nj: neighbour-joining, min: UPGMA single linkage, max:  UPGMA
              complete linkage, avg: UPGMA average linkage, wavg: UPGMA weighted average linkage.
              Neighbour-joining creates an unrooted tree. We root that tree at the  least  joined
              pair. One of nj, min, max, avg, and wavg. Default: nj.

       CONTACT AND REFERENCES

              For questions or comments, contact:

              Tobias Rausch <rausch@embl.de>

              SeqAn Homepage:

              http://www.seqan.de

       VERSION

              tree_recon version: 1.02 Last update July 17, 2012