NAME

       trees-bootstrap - Compare support for partitions between different files.

SYNOPSIS

       trees-bootstrap file1 [file2 ...  ] --predicates predicate file [OPTIONS]

DESCRIPTION

       Compare support for partitions between different files.

INPUT OPTIONS:

       -h, --help
              Produce help message.

       -s arg (=10%), --skip arg (=10%)
              Number of trees to skip.

       -u arg, --until arg
              Read until this number of trees.

       -m arg, --max arg
              Thin tree samples down to this number of trees.

       -x arg, --subsample arg
              Factor by which to sub-sample.

       --predicates arg
              Predicates to examine.

       --min-support arg (=0.1)
              Minimum value of predicates to consider interesting..

       -v, --verbose
              Output more log messages on stderr.

BLOCK BOOTSTRAP OPTIONS:

       --bootstrap
              Do block bootstrapping to get a CI on the posterior probabilities.

       --samples arg (=10000)
              Number of bootstrap samples.

       --pseudocount arg (=1)
              Extra 0/1 to add to bootstrap samples.

       --blocksize arg
              Block size to use in block boostrap.

       --seed arg
              Random seed.

REPORTING OPTIONS:

       --separation arg (=0)
              Only report trees/partitions if they differ by this many LODs

       --confidence arg (=0.95)
              Width of confidence intervals

       --LOD-table arg
              Write the partitions LOD10's to a file.

REPORTING BUGS:

       BAli-Phy online help: <http://www.bali-phy.org/docs.php>.

       Please send bug reports to <bali-phy-users@googlegroups.com>.

AUTHORS

       Benjamin Redelings.

                                             Feb 2018                          trees-bootstrap(1)