Provided by: infernal_1.1.2-1_amd64 bug

NAME
       cmpress - prepare a covariance model database for cmscan


SYNOPSIS
       cmpress [options] <cmfile>


DESCRIPTION
       Starting  from  a  CM  database  <cmfile>  in  standard  Infernal-1.1 format, construct binary compressed
       datafiles for cmscan.  The cmpress step is required for cmscan to work.

       The <cmfile> must be have already been calibrated with cmcalibrate for cmpress to work.

       Four files are created: <cmfile>.i1m, <cmfile>.i1i, <cmfile>.i1f,  and  <cmfile>.i1p.   The  <cmfile>.i1m
       file  contains  the covariance models, associated filter p7 profile HMMs and their annotation in a binary
       format.  The <cmfile>.i1i file is an SSI index for the <cmfile>.i1m file.  The <cmfile>.i1f file contains
       precomputed data structures for the fast heuristic filter (the SSV filter) for the filter p7 profile HMMs
       in <cmfile>.  The <cmfile>.i1p file contains precomputed data structures for the  rest  of  each  profile
       filter p7 HMM.

       <cmfile>  may  not  be  '-'  (dash); running cmpress on a standard input stream rather than a file is not
       allowed.


OPTIONS
       -h     Help; print a brief reminder of command line usage and all available options.

       -F     Force; overwrites any previous cmpress'ed datafiles. The default is to bitch  about  any  existing
              files and ask you to delete them first.


SEE ALSO
       See  infernal(1)  for  a  master man page with a list of all the individual man pages for programs in the
       Infernal package.

       For complete documentation, see the user guide that came with your Infernal distribution (Userguide.pdf);
       or see the Infernal web page ().


COPYRIGHT
       Copyright (C) 2016 Howard Hughes Medical Institute.
       Freely distributed under a BSD open source license.

       For additional information on copyright and licensing, see the file called  COPYRIGHT  in  your  Infernal
       source distribution, or see the Infernal web page ().


AUTHOR
       The Eddy/Rivas Laboratory
       Janelia Farm Research Campus
       19700 Helix Drive
       Ashburn VA 20147 USA
       http://eddylab.org

Infernal 1.1.2                                      July 2016                                         cmpress(1)