Provided by: gridengine-common_8.1.9+dfsg-7build1_all 
NAME
sge_conf - Grid Engine configuration files
DESCRIPTION
sge_conf defines the global and local Grid Engine configurations and can be shown/modified
by qconf(1) using the -sconf/-mconf options. Only root or the cluster administrator may
modify sge_conf.
At its initial start-up, sge_qmaster(8) checks to see if a valid Grid Engine configuration
is available at a well known location in the Grid Engine internal directory hierarchy. If
so, it loads that configuration information and proceeds. If not, sge_qmaster(8) writes a
generic configuration containing default values to that same location. The Grid Engine
execution daemons sge_execd(8) upon start-up retrieve their configuration from
sge_qmaster(8).
The actual configuration for both sge_qmaster(8) and sge_execd(8) is a superposition of a
global configuration and a local configuration pertinent for the host on which a master or
execution daemon resides. If a local configuration is available, its entries overwrite
the corresponding entries of the global configuration. Note: The local configuration does
not have to contain all valid configuration entries, but only those which need to be
modified against the global entries.
Note: Grid Engine allows backslashes (\) be used to escape newline characters. The
backslash and the newline are replaced with a space (" ") character before any
interpretation.
FORMAT
The paragraphs that follow provide brief descriptions of the individual parameters that
compose the global and local configurations for a Grid Engine cluster:
execd_spool_dir
The execution daemon spool directory path. Again, a feasible spool directory requires
read/write access permission for root. The entry in the global configuration for this
parameter can be overwritten by execution host local configurations, i.e. each
sge_execd(8) may have a private spool directory with a different path, in which case it
needs to provide read/write permission for the root account of the corresponding execution
host only.
Under execd_spool_dir a directory named corresponding to the unqualified hostname of the
execution host is opened and contains all information spooled to disk. Thus, it is
possible for the execd_spool_dirs of all execution hosts to physically reference the same
directory path (the root access restrictions mentioned above need to be met, however).
Changing the global execd_spool_dir parameter set at installation time is not supported in
a running system. If the change should still be done it is required to restart all
affected execution daemons. Please make sure running jobs have finished before doing so,
otherwise running jobs will be lost.
The default location for the execution daemon spool directory is
$SGE_ROOT/$SGE_CELL/spool.
The global configuration entry for this value may be overwritten by the execution host
local configuration.
mailer
mailer is the absolute pathname to the electronic mail delivery agent on your system. An
optional prefix "user@" specifies the user under which this procedure is to be started;
the default is root. The mailer must accept the following syntax:
mailer -s <subject-of-mail-message> <recipient>
Each sge_execd(8) may use a private mail agent. Changing mailer will take immediate
effect.
The default for mailer depends on the operating system of the host on which the Grid
Engine master installation was run. Common values are /bin/mail or /usr/bin/Mail. Note
that since the mail is sent by compute hosts, not the master, it may be necessary to take
steps to route it appropriately, e.g. by using a cluster head node as a "smart host" for
the private network.
The global configuration entry for this value may be overwritten by the execution host
local configuration.
xterm
xterm is the absolute pathname to the X Window System terminal emulator, xterm(1).
Changing xterm will take immediate effect.
The default for xterm is system-dependent.
The global configuration entry for this value may be overwritten by the execution host
local configuration.
load_sensor
A comma-separated list of executable shell script paths or programs to be started by
sge_execd(8) and to be used in order to retrieve site-configurable load information (e.g.
free space on a certain disk partition).
Each sge_execd(8) may use a set of private load_sensor programs or scripts. Changing
load_sensor will take effect after two load report intervals (see load_report_time). A
load sensor will be restarted automatically if the file modification time of the load
sensor executable changes.
The global configuration entry for this value may be overwritten by the execution host
local configuration.
In addition to the load sensors configured via load_sensor, sge_exec(8) searches for an
executable file named qloadsensor in the execution host's Grid Engine binary directory
path. If such a file is found, it is treated like the configurable load sensors defined
in load_sensor. This facility is intended for pre-installing a default load sensor. See
sge_execd(8) for information on writing load sensors.
prolog
The path of an executable, with optional arguments, that is started before execution of
Grid Engine jobs with the same environment setting as that for the Grid Engine jobs to be
started afterwards (see qsub(1)). The prolog command is started directly, not in a shell.
An optional prefix "user@" specifies the user under which this procedure is to be started.
In that case see the SECURITY section below concerning security issues running as a
privileged user. The procedure's standard output and the error output stream are written
to the same file as used for the standard output and error output of each job.
This procedure is intended as a means for the Grid Engine administrator to automate the
execution of general site-specific tasks, like the preparation of temporary file systems,
with a need for the same context information as the job. For a parallel job, only a
single instance of the prolog is run, on the master node. Each sge_execd(8) may use a
private prolog. Correspondingly, the global or execution host local configuration can be
overwritten by the queue configuration (see queue_conf(5)). Changing prolog will take
immediate effect.
The default for prolog is the special value NONE, which prevents execution of a prolog.
The following special variables, expanded at runtime, can be used (besides any other
strings which have to be interpreted by the procedure) to compose a command line:
$host The name of the host on which the prolog or epilog procedures are started.
$ja_task_id
The array job task index (0 if not an array job).
$job_owner
The user name of the job owner.
$job_id
Grid Engine's unique job identification number.
$job_name
The name of the job.
$processors
The processors string as contained in the queue configuration (see queue_conf(5))
of the master queue (the queue in which the prolog and epilog procedures are
started).
$queue The cluster queue name of the master queue instance, i.e. the cluster queue in
which the prolog and epilog procedures are started.
$stdin_path
The pathname of the stdin file. This is always /dev/null for prolog, pe_start,
pe_stop and epilog. It is the pathname of the stdin file for the job in the job
script. When delegated file staging is enabled, this path is set to
$fs_stdin_tmp_path. When delegated file staging is not enabled, it is the stdin
pathname given via DRMAA or qsub.
$stdout_path
$stderr_path
The pathname of the stdout/stderr file. This always points to the output/error
file. When delegated file staging is enabled, this path is set to
$fs_stdout_tmp_path/$fs_stderr_tmp_path. When delegated file staging is not
enabled, it is the stdout/stderr pathname given via DRMAA or qsub.
$merge_stderr
If this flag is 1, stdout and stderr are merged in one file, the stdout file.
Otherwise (the default), no merging is done. Merging of stderr and stdout can be
requested via the DRMAA job template attribute 'drmaa_join_files' (see
drmaa_attributes(3)) or the qsub parameter '-j y' (see qsub(1)).
$fs_stdin_host
When delegated file staging is requested for the stdin file, this is the name of
the host where the stdin file has to be copied from before the job is started.
$fs_stdout_host
$fs_stderr_host
When delegated file staging is requested for the stdout/stderr file, this is the
name of the host where the stdout/stderr file has to be copied to after the job has
run.
$fs_stdin_path
When delegated file staging is requested for the stdin file, this is the pathname
of the stdin file on the host $fs_stdin_host.
$fs_stdout_path
$fs_stderr_path
When delegated file staging is requested for the stdout/stderr file, this is the
pathname of the stdout/stderr file on the host $fs_stdout_host/$fs_stderr_host.
$fs_stdin_tmp_path
When delegated file staging is requested for the stdin file, this is the
destination pathname of the stdin file on the execution host. The prolog must copy
the stdin file from $fs_stdin_host:$fs_stdin_path to localhost:$fs_stdin_tmp_path
to establish delegated file staging of the stdin file.
$fs_stdout_tmp_path
$fs_stderr_tmp_path
When delegated file staging is requested for the stdout/stderr file, this is the
source pathname of the stdout/stderr file on the execution host. The epilog must
copy the stdout file from localhost:$fs_stdout_tmp_path to
$fs_stdout_host:$fs_stdout_path (the stderr file from localhost:$fs_stderr_tmp_path
to $fs_stderr_host:$fs_stderr_path) to establish delegated file staging of the
stdout/stderr file.
$fs_stdin_file_staging
$fs_stdout_file_staging
$fs_stderr_file_staging
When delegated file staging is requested for the stdin/stdout/stderr file, the flag
is set to "1", otherwise it is set to "0" (see in delegated_file_staging how to
enable delegated file staging). These three flags correspond to the DRMAA job
template attribute 'drmaa_transfer_files' (see drmaa_attributes(3)).
If the prolog is written in shell script, the usual care must be exercised, e.g. when
expanding such values from the command line or the environment which are user-supplied.
In particular, note that the job name could be of the form "; evil doings;". Also, use
absolute path names for commands if inheriting the user's environment.
The global configuration entry for this value may be overwritten by the execution host
local configuration.
See sge_shepherd(8) for the significance of exit codes returned by the prolog.
epilog
The path of an executable, with optional argument, that is started after execution of Grid
Engine jobs with the same environment setting as that for the Grid Engine job that has
just completed (see qsub(1)), with the addition of the variable named SGE_JOBEXIT_STAT
which holds the exit status of the job. The epilog command is started directly, not in a
shell. An optional prefix "user@" specifies the user under which this procedure is to be
started. In that case see the SECURITY section below concerning security issues running
as a privileged user. The procedure's standard output and the error output stream are
written to the same file used for the standard output and error output of each job.
The same special variables can be used to compose a command line as for the prolog.
This procedure is intended as a means for the Grid Engine administrator to automate the
execution of general site-specific tasks, like the cleaning up of temporary file systems
with the need for the same context information as the job. For a parallel job, only a
single instance of the epilog is run, on the master node. Each sge_execd(8) may use a
private epilog. Correspondingly, the global or execution host local configurations can be
overwritten by the queue configuration (see queue_conf(5)). Changing epilog will take
immediate effect.
The default for epilog is the special value NONE, which prevents execution of an epilog.
The same special variables as for prolog can be used to constitute a command line.
The same considerations (above) apply as for a prolog when an epilog is written in shell
script.
See sge_shepherd(8) for the significance of exit codes returned by the epilog.
shell_start_mode
Note: Deprecated, may be removed in future release.
This parameter defines the mechanisms which are used to actually invoke the job scripts on
the execution hosts. The following values are recognized:
unix_behavior
If a user starts a job shell script under UNIX interactively by invoking it just
with the script name the operating system's executable loader uses the information
provided in a comment such as `#!/bin/csh' in the first line of the script to
detect which command interpreter to start to interpret the script. This mechanism
is used by Grid Engine when starting jobs if unix_behavior is defined as
shell_start_mode.
posix_compliant
POSIX does not consider first script line comments such a `#!/bin/csh' as
significant. The POSIX standard for batch queueing systems (P1003.2d) therefore
requires a compliant queueing system to ignore such lines, but to use user-
specified or configured default command interpreters instead. Thus, if
shell_start_mode is set to posix_compliant Grid Engine will either use the command
interpreter indicated by the -S option of the qsub(1) command or the shell
parameter of the queue to be used (see queue_conf(5) for details).
script_from_stdin
Setting the shell_start_mode parameter either to posix_compliant or unix_behavior
requires you to set the umask in use for sge_execd(8) such that every user has read
access to the active_jobs directory in the spool directory of the corresponding
execution daemon. In case you have prolog and epilog scripts configured, they also
need to be readable by any user who may execute jobs.
If this violates your site's security policies you may want to set shell_start_mode
to script_from_stdin. This will force Grid Engine to open the job script as well as
the epilog and prolog scripts for reading into STDIN as root (if sge_execd(8) was
started as root) before changing to the job owner's user account. The script is
then fed into the STDIN stream of the command interpreter indicated by the -S
option of the qsub(1) command or the shell parameter of the queue to be used (see
queue_conf(5) for details).
Thus setting shell_start_mode to script_from_stdin also implies posix_compliant
behavior. Note, however, that feeding scripts into the STDIN stream of a command
interpreter may cause trouble if commands like rsh(1) are invoked inside a job
script as they also process the STDIN stream of the command interpreter. These
problems can usually be resolved by redirecting the STDIN channel of those commands
to come from /dev/null (e.g. rsh host date < /dev/null). Note also, that any
command-line options associated with the job are passed to the executing shell. The
shell will only forward them to the job if they are not recognized as valid shell
options.
Changes to shell_start_mode will take immediate effect. The default for shell_start_mode
is posix_compliant.
This value is a global configuration parameter only. It cannot be overwritten by the
execution host local configuration.
login_shells
UNIX command interpreters like the Bourne-Shell (see sh(1)) or the C-Shell (see csh(1))
can be used by Grid Engine to start job scripts. The command interpreters can either be
started as login-shells (i.e. all system and user default resource files like .login or
.profile will be executed when the command interpreter is started, and the environment for
the job will be set up as if the user has just logged in) or just for command execution
(i.e. only shell-specific resource files like .cshrc will be executed and a minimal
default environment is set up by Grid Engine - see qsub(1)). The parameter login_shells
contains a comma-separated list of the executable names of the command interpreters to be
started as login shells. Shells in this list are only started as login shells if the
parameter shell_start_mode (see above) is set to posix_compliant.
Changes to login_shells will take immediate effect. The default for login_shells is
sh,bash,csh,tcsh,ksh.
This value is a global configuration parameter only. It cannot be overwritten by the
execution host local configuration.
min_uid
min_uid places a lower bound on user IDs that may use the cluster. Users whose user ID (as
returned by getpwnam(3)) is less than min_uid will not be allowed to run jobs on the
cluster.
Changes to min_uid will take immediate effect. The default is 0 but, if CSP or MUNGE
security is not in use, the installation script sets it to 100 to prevent unauthorized
access by root or system accounts.
This value is a global configuration parameter only. It cannot be overwritten by the
execution host local configuration.
min_gid
This parameter sets the lower bound on group IDs that may use the cluster. Users whose
default group ID (as returned by getpwnam(3)) is less than min_gid will not be allowed to
run jobs on the cluster.
Changes to min_gid will take immediate effect. The default is 0 but, if CSP security is
not in use, the installation script sets it to 100 to prevent unauthorized access by root
or system accounts.
This value is a global configuration parameter only. It cannot be overwritten by the
execution host local configuration.
user_lists
The user_lists parameter contains a comma-separated list of user access lists as described
in access_list(5). Each user contained in at least one of the access lists has access to
the cluster. If the user_lists parameter is set to NONE (the default) any user has access
if not explicitly excluded via the xuser_lists parameter described below. If a user is
contained both in an access list xuser_lists and user_lists, the user is denied access to
the cluster.
Changes to user_lists will take immediate effect.
This value is a global configuration parameter insofar as it restricts access to the whole
cluster, but the execution host local configuration may define a value to restrict access
to that host further.
xuser_lists
The xuser_lists parameter contains a comma-separated list of user access lists as
described in access_list(5). Each user contained in at least one of the access lists is
denied access to the cluster. If the xuser_lists parameter is set to NONE (the default)
any user has access. If a user is contained both in an access list in xuser_lists and
user_lists (see above) the user is denied access to the cluster.
Changes to xuser_lists will take immediate effect.
This value is a global configuration parameter insofar as it restricts access to the whole
cluster, but the execution host local configuration may define a value to restrict access
to that host further.
administrator_mail
administrator_mail specifies a comma-separated list of the electronic mail address(es) of
the cluster administrator(s) to whom internally-generated problem reports are sent. The
mail address format depends on your electronic mail system and how it is configured;
consult your system's configuration guide for more information.
Changing administrator_mail takes immediate effect. The default for administrator_mail is
an empty mail list.
This value is a global configuration parameter only. It cannot be overwritten by the
execution host local configuration.
projects
The projects list contains all projects which are granted access to Grid Engine. Users not
belonging to one of these projects cannot submit jobs. If users belong to projects in the
projects list and the xprojects list (see below), they also cannot submit jobs.
Changing projects takes immediate effect. The default for projects is none.
While globally-configured projects affect job submission, projects configured for queues
or hosts affect job execution in the appropriate context.
xprojects
The xprojects list contains all projects that are denied access to Grid Engine. Users
belonging to one of these projects cannot use Grid Engine. If users belong to projects in
the projects list (see above) and the xprojects list, they also cannot use the system.
Changing xprojects takes immediate effect. The default for xprojects is none.
This value is a global configuration parameter only. It cannot be overwritten by the
execution host local configuration.
load_report_time
System load is reported periodically by the execution daemons to sge_qmaster(8). The
parameter load_report_time defines the time interval between load reports.
Each sge_execd(8) may use a different load report time. Changing load_report_time will
take immediate effect.
Note: Be careful when modifying load_report_time. Reporting load too frequently might
block sge_qmaster(8) especially if the number of execution hosts is large. Moreover, since
the system load typically increases and decreases smoothly, frequent load reports hardly
offer any benefit.
The default for load_report_time is 40 seconds.
The global configuration entry for this value may be overwritten by the execution host
local configuration.
reschedule_unknown
Determines whether jobs on hosts in an unknown state are rescheduled, and thus sent to
other hosts. Hosts are registered as unknown if sge_master(8) cannot establish contact to
the sge_execd(8) on those hosts (see max_unheard). Likely reasons are a breakdown of the
host or a breakdown of the network connection in between, but also sge_execd(8) may not be
executing on such hosts.
In any case, Grid Engine can reschedule jobs running on such hosts to another system.
reschedule_unknown controls the time which Grid Engine will wait before jobs are
rescheduled after a host became unknown. The time format specification is hh:mm:ss. If the
special value 00:00:00 is set, then jobs will not be rescheduled from this host.
Rescheduling is only initiated for jobs which have activated the rerun flag (see the -r y
option of qsub(1) and the rerun option of queue_conf(5)). Parallel jobs are only
rescheduled if the host on which their master task executes is in unknown state. The
behavior of reschedule_unknown for parallel jobs and for jobs without the rerun flag set
can be adjusted using the qmaster_params settings ENABLE_RESCHEDULE_KILL and
ENABLE_RESCHEDULE_SLAVE.
Checkpointing jobs will only be rescheduled when the when option of the corresponding
checkpointing environment contains an appropriate flag. (see checkpoint(5)). Interactive
jobs (see qsh(1), qrsh(1), qtcsh(1)) are not rescheduled.
The default for reschedule_unknown is 00:00:00
The global configuration entry for this value may be overwritten by the execution host
local configuration.
max_unheard
If sge_qmaster(8) could not contact, or was not contacted by, the execution daemon of a
host for max_unheard seconds, all queues residing on that particular host are set to
status unknown. sge_qmaster(8), at least, should be contacted by the execution daemons in
order to get the load reports. Thus, max_unheard should be greater than the
load_report_time (see above).
Changing max_unheard takes immediate effect. The default for max_unheard is 5 minutes.
This value is a global configuration parameter only. It cannot be overwritten by the
execution host local configuration.
loglevel
This parameter specifies the level of detail that Grid Engine components such as
sge_qmaster(8) or sge_execd(8) use to produce informative, warning or error messages which
are logged to the messages files in the master and execution daemon spool directories (see
the description of the execd_spool_dir parameter above). The following message levels are
available:
log_err
All error events recognized are logged.
log_warning
All error events recognized, and all detected signs of potentially erroneous
behavior, are logged.
log_info
All error events recognized, all detected signs of potentially erroneous behavior,
and a variety of informative messages are logged.
Changing loglevel will take immediate effect.
The default for loglevel is log_warning.
This value is a global configuration parameter only. It cannot be overwritten by the
execution host local configuration.
max_aj_instances
This parameter defines the maximum number of array tasks to be scheduled to run
simultaneously per array job. An instance of an array task will be created within the
master daemon when it gets a start order from the scheduler. The instance will be
destroyed when the array task finishes. Thus the parameter provides control mainly over
the memory consumption of array jobs in the master daemon. It is most useful for very
large clusters and very large array jobs. The default for this parameter is 2000. The
value 0 will deactivate this limit and will allow the scheduler to start as many array job
tasks as suitable resources are available in the cluster.
Changing max_aj_instances will take immediate effect.
This value is a global configuration parameter only. It cannot be overwritten by the
execution host local configuration.
max_aj_tasks
This parameter defines the maximum number of array job tasks within an array job.
sge_qmaster(8) will reject all array job submissions which request more than max_aj_tasks
array job tasks. The default for this parameter is 75000. The value 0 will deactivate this
limit.
Changing max_aj_tasks will take immediate effect.
This value is a global configuration parameter only. It cannot be overwritten by the
execution host local configuration.
max_u_jobs
The number of active (not finished) jobs which each Grid Engine user can have in the
system simultaneously is controlled by this parameter. A value greater than 0 defines the
limit. The default value 0 means "unlimited". If the max_u_jobs limit is exceeded by a job
submission then the submission command exits with exit status 25 and an appropriate error
message.
Changing max_u_jobs will take immediate effect.
This value is a global configuration parameter only. It cannot be overwritten by the
execution host local configuration.
max_jobs
The number of active (not finished) jobs simultaneously allowed in Grid Engine is
controlled by this parameter. A value greater than 0 defines the limit. The default value
0 means "unlimited". If the max_jobs limit is exceeded by a job submission then the
submission command exits with exit status 25 and an appropriate error message.
Changing max_jobs will take immediate effect.
This value is a global configuration parameter only. It cannot be overwritten by the
execution host local configuration.
max_advance_reservations
The number of active (not finished) Advance Reservations simultaneously allowed in Grid
Engine is controlled by this parameter. A value greater than 0 defines the limit. The
default value 0 means "unlimited". If the max_advance_reservations limit is exceeded by an
Advance Reservation request then the submission command exits with exit status 25 and an
appropriate error message.
Changing max_advance_reservations will take immediate effect.
This value is a global configuration parameter only. It cannot be overwritten by the
execution host local configuration.
enforce_project
If set to true, users are required to request a project whenever submitting a job. See the
-P option to qsub(1) for details.
Changing enforce_project will take immediate effect. The default for enforce_project is
false.
This value is a global configuration parameter only. It cannot be overwritten by the
execution host local configuration.
enforce_user
If set to true, a user(5) must exist to allow for job submission. Jobs are rejected if no
corresponding user exists.
If set to auto, a user(5) object for the submitting user will automatically be created
during job submission, if one does not already exist. The auto_user_oticket,
auto_user_fshare, auto_user_default_project, and auto_user_delete_time configuration
parameters will be used as default attributes of the new user(5) object.
Changing enforce_user will take immediate effect. The default for enforce_user is auto.
This value is a global configuration parameter only. It cannot be overwritten by the
execution host local configuration.
auto_user_oticket
The number of override tickets to assign to automatically created user(5) objects. User
objects are created automatically if the enforce_user attribute is set to auto.
Changing auto_user_oticket will affect any newly created user objects, but will not change
user objects created in the past.
This value is a global configuration parameter only. It cannot be overwritten by the
execution host local configuration.
auto_user_fshare
The number of functional shares to assign to automatically created user(5) objects. User
objects are created automatically if the enforce_user attribute is set to auto.
Changing auto_user_fshare will affect any newly created user objects, but will not change
user objects created in the past.
This value is a global configuration parameter only. It cannot be overwritten by the
execution host local configuration.
auto_user_default_project
The default project to assign to automatically created user(5) objects. User objects are
created automatically if the enforce_user attribute is set to auto.
Changing auto_user_default_project will affect any newly created user objects, but will
not change user objects created in the past.
This value is a global configuration parameter only. It cannot be overwritten by the
execution host local configuration.
auto_user_delete_time
The number of seconds of inactivity after which automatically created user(5) objects will
be deleted. User objects are created automatically if the enforce_user attribute is set to
auto. If the user has no active or pending jobs for the specified amount of time, the
object will automatically be deleted. A value of 0 can be used to indicate that the
automatically created user object is permanent and should not be automatically deleted.
Changing auto_user_delete_time will affect the deletion time for all users with active
jobs.
This value is a global configuration parameter only. It cannot be overwritten by the
execution host local configuration.
set_token_cmd
NB. If the qmaster spool area is world-readable for non-admin users, you must take steps
to encrypt the credentials, since they are stored there after job submission.
Set_token_cmd points to a command which sets and extends AFS tokens for Grid Engine jobs.
It is run by sge_coshepherd(8). It expects two command line parameters:
<set_token_cmd> <user> <token_extend_after_seconds>
It reads the token from STDIN, extends its expiration time, and re-sets the token. As a
shell script this command will call the programs:
- SetToken
- forge
which are provided by your distributor as source code. The script looks as follows:
--------------------------------
#!/bin/sh
# set_token_cmd
forge -u $1 -t $2 | SetToken
--------------------------------
Since it is necessary for forge to read the secret AFS server key, a site might wish to
replace the set_token_cmd script by a command, which connects to a custom daemon at the
AFS server. The token must be forged at the AFS server and returned to the local machine,
where SetToken is executed.
Changing set_token_cmd will take immediate effect. The default for set_token_cmd is none.
The global configuration entry for this value may be overwritten by the execution host
local configuration.
pag_cmd
The path to your pagsh is specified via this parameter. The sge_shepherd(8) process and
the job run in a pagsh. Please ask your AFS administrator for details.
Changing pag_cmd will take immediate effect. The default for pag_cmd is none.
The global configuration entry for this value may be overwritten by the execution host
local configuration.
token_extend_time
The token_extend_time is the time period for which AFS tokens are periodically extended.
Grid Engine will call the token extension 30 minutes before the tokens expire until jobs
have finished and the corresponding tokens are no longer required.
Changing token_extend_time will take immediate effect. The default for token_extend_time
is 24:0:0, i.e. 24 hours.
The global configuration entry for this value may be overwritten by the execution host
local configuration.
shepherd_cmd
Alternative path to the shepherd_cmd binary. Typically used to call the shepherd binary by
a wrapper script or command. If used in production, this must take care to handle signals
the way the shepherd would or, for instance, jobs will not be killed correctly.
Changing shepherd_cmd will take immediate effect. The default for shepherd_cmd is none.
The global configuration entry for this value may be overwritten by the execution host
local configuration.
gid_range
The gid_range is a comma-separated list of range expressions of the form m-n, where m and
n are integer numbers greater than 99, and m is an abbreviation for m-m. These numbers
are used in sge_execd(8) to identify processes belonging to the same job.
Each sge_execd(8) may use a separate set of group ids for this purpose. All numbers in
the group id range have to be unused supplementary group ids on the system, where the
sge_execd(8) is started.
Changing gid_range will take immediate effect. There is no default for gid_range. The
administrator will have to assign a value for gid_range during installation of Grid
Engine.
The global configuration entry for this value may be overwritten by the execution host
local configuration.
qmaster_params
A list of additional parameters can be passed to the Grid Engine qmaster. The following
values are recognized:
ENABLE_ENFORCE_MASTER_LIMIT
If this parameter is set then the s_rt, h_rt limits of a running job are tested and
acted on by the sge_qmaster(8) when the sge_execd(8) where the job was run is in an
unknown state.
After the s_rt or h_rt limit of a job is expired, the master daemon will wait
additional time defined by DURATION_OFFSET (see sched_conf(5)). If the execution
daemon still cannot be contacted when this additional time is elapsed, then the
master daemon will force the deletion of the job (see -f of qdel(1)).
For jobs which will be deleted that way, an accounting record will be created. For
usage, the record will contain the last reported online value when the execution
daemon could contact qmaster. The failed state in the record will be set to 37 to
indicate that the job was terminated by a limit enforced by the master daemon.
After the restart of sge_qmaster(8) the limit enforcement will be triggered after
twice the biggest load_report_interval interval defined in sge_conf(5) has elapsed.
This will give the execution daemons enough time to re-register with the master
daemon.
ENABLE_FORCED_QDEL_IF_UNKNOWN
If this parameter is set then a deletion request for a job is automatically
interpreted as a forced deletion request (see -f of qdel(1)) if the host where the
job is running is in an unknown state.
ENABLE_FORCED_QDEL
If this parameter is set, non-administrative users can force deletion of their own
jobs via the -f option of qdel(1). Without this parameter, forced deletion of jobs
is only allowed by the Grid Engine manager or operator.
Note: Forced deletion for jobs is executed differently, depending on whether users
are Grid Engine administrators or not. In the case of administrative users, the
jobs are removed from the internal database of Grid Engine immediately. For regular
users, the equivalent of a normal qdel(1) is executed first, and deletion is forced
only if the normal cancellation was unsuccessful.
FORBID_RESCHEDULE
If this parameter is set, re-queueing of jobs cannot be initiated by the job script
which is under control of the user. Without this parameter, jobs returning the
value 99 are rescheduled. This can be used to cause the job to be restarted on a
different machine, for instance if there are not enough resources on the current
one.
FORBID_APPERROR
If this parameter is set, the application cannot set itself to the error state.
Without this parameter jobs returning the value 100 are set to the error state (and
therefore can be manually rescheduled by clearing the error state). This can be
used to set the job to the error state when a starting condition of the application
is not fulfilled before the application itself has been started, or when a clean up
procedure (e.g. in the epilog) decides that it is necessary to run the job again.
To do so, return 100 in the prolog, pe_start, job script, pe_stop or epilog script.
DISABLE_AUTO_RESCHEDULING
Note: Deprecated, may be removed in future release.
If set to "true" or "1", the reschedule_unknown parameter is not taken into
account.
ENABLE_RESCHEDULE_KILL
If set to "true" or "1", the reschedule_unknown parameter affects also jobs which
have the rerun flag not activated (see the -r y option of qsub(1) and the rerun
option of queue_conf(5)), but they are just finished as they can't be rescheduled.
ENABLE_RESCHEDULE_SLAVE
If set to "true" or "1" Grid Engine triggers job rescheduling also when the host
where the slave tasks of a parallel job executes is in unknown state, if the
reschedule_unknown parameter is activated.
MAX_DYN_EC
Sets the max number of dynamic event clients (as used by qsub -sync y and by Grid
Engine DRMAA API library sessions). The default is 1000. The number of dynamic
event clients should not be bigger than half of the number of file descriptors the
system has. The number of file descriptors are shared among the connections to all
exec hosts, all event clients, and file handles that the qmaster needs.
MONITOR_TIME
Specifies the time interval when the monitoring information should be printed. The
monitoring is disabled by default and can be enabled by specifying an interval.
The monitoring is per-thread and is written to the messages file or displayed by
qping(1) with option -f. Example: MONITOR_TIME=0:0:10 generates and prints the
monitoring information approximately every 10 seconds. The specified time is a
guideline only and not a fixed interval. The interval that is actually used is
printed. In this example, the interval could be anything between 9 seconds and 20
seconds.
LOG_MONITOR_MESSAGE
Monitoring information is logged into the messages files by default. This
information can be accessed via by qping(1). If monitoring is always enabled, the
messages files can become quite large. This switch disables logging into the
messages files, making qping -f the only source of monitoring data.
Profiling provides the user with the possibility to get system measurements. This can be
useful for debugging or optimization of the system. The profiling output will be done
within the messages file.
PROF_SIGNAL
Enables profiling for the qmaster signal thread (e.g. PROF_SIGNAL=true).
PROF_WORKER
Enables profiling for the qmaster worker threads (e.g. PROF_WORKER=true).
PROF_LISTENER
Enables profiling for the qmaster listener threads (e.g. PROF_LISTENER=true).
PROF_DELIVER
Enables profiling for the qmaster event deliver thread (e.g. PROF_DELIVER=true).
PROF_TEVENT
Enables the profiling for the qmaster timed event thread (e.g. PROF_TEVENT=true).
PROF_SCHEDULER
Enables profiling for the qmaster scheduler thread (e.g. PROF_SCHEDULER=true).
Please note that the CPU utime and stime values contained in the profiling output are not
per-thread CPU times. These CPU usage statistics are per-process statistics. So the
printed profiling values for CPU mean "CPU time consumed by sge_qmaster (all threads)
while the reported profiling level was active".
STREE_SPOOL_INTERVAL
Sets the time interval for spooling the sharetree usage. The default is set to
00:04:00. The setting accepts colon-separated string or seconds. There is no
setting to turn the sharetree spooling off. (e.g. STREE_SPOOL_INTERVAL=00:02:00)
MAX_JOB_DELETION_TIME
Sets the value of how long the qmaster will spend deleting jobs. After this time,
the qmaster will continue with other tasks and schedule the deletion of remaining
jobs at a later time. The default value is 3 seconds, and will be used if no value
is entered. The range of valid values is > 0 and <= 5. (e.g.
MAX_JOB_DELETION_TIME=1)
gdi_timeout
Sets how long the communication will wait for GDI send/receive operations. (GDI is
the Grid Engine Database Interface for interacting with objects managed by the
qmaster.) The default value is set to 60 seconds. After this time, the
communication library will retry, if "gdi_retries" is configured, receiving the GDI
request. If not configured the communication will return with a "gdi receive
failure" (e.g. gdi_timeout=120 will set the timeout time to 120 sec). Configuring
no gdi_timeout value, the value defaults to 60 sec.
gdi_retries
Sets how often the GDI receive call will be repeated until the GDI receive error
appears. The default is set to 0. In this case the call will be done 1 time with no
retry. Setting the value to -1 the call will be done permanently. In combination
with the gdi_timeout parameter it is possible to configure a system with, e.g. slow
NFS, to make sure that all jobs will be submitted. (E.g. gdi_retries=4.)
cl_ping
Turns on/off a communication library ping. This parameter will create additional
debug output. This output shows information about the error messages which are
returned by communication and it will give information about the application status
of the qmaster. For example, if it's unclear what's the reason for gdi timeouts,
this may show you some useful messages. The default value is false (off) (i.e.
cl_ping=false).
SCHEDULER_TIMEOUT
Setting this parameter allows the scheduler GDI event acknowledge timeout to be
manually configured to a specific value. Currently the default value is 10 minutes
with the default scheduler configuration and limited between 600 and 1200 seconds.
Value is limited only in case of default value. The default value depends on the
current scheduler configuration. The SCHEDULER_TIMEOUT value is specified in
seconds.
jsv_timeout
This parameter measures the response time of the server JSV. In the event that the
response time of the JSV is longer than the timeout value specified, this will
cause the JSV to be re-started. The default value for the timeout is 10 seconds and
if modified, must be greater than 0. If the timeout is reached, the JSV will only
try to re-start once; if the timeout is reached again, an error will occur.
jsv_threshold
The threshold of a JSV is measured as the time it takes to perform a server job
verification. If this value is greater than the user-defined value, it will cause
logging to appear in the qmaster messages file at the INFO level. By setting this
value to 0, all jobs will be logged in the qmaster messages file. This value is
specified in milliseconds and has a default value of 5000.
OLD_RESCHEDULE_BEHAVIOR
Beginning with version 8.0.0 of Grid Engine the scheduling behavior changed for
jobs that are rescheduled by users. Rescheduled jobs will not be put at the
beginning of the pending job list anymore. The submit time of those jobs is set to
the end time of the previous run. Due to that, those rescheduled jobs will be
appended to the pending job list as if a new job had been submitted. To achieve the
old behaviour, set the parameter OLD_RESCHEDULE_BEHAVIOR. Please note that this
parameter is deprecated, so it might be removed with the next minor release.
OLD_RESCHEDULE_BEHAVIOR_ARRAY_JOB
Beginning with version 8.0.0 of Grid Engine the scheduling behavior changed for
array job tasks that are rescheduled by users. As soon as an array job task gets
rescheduled, all remaining pending tasks of that job will be put at the end of the
pending job list. To achieve the old scheduling behaviour set the parameter
OLD_RESCHEDULE_BEHAVIOR_ARRAY_JOB. Please note that this parameter is deprecated,
so it might be removed with the next minor release.
SIMULATE_EXECDS
Bypass execd communication in qmaster for (e.g. for throughput tests with fake
hosts). "Unknown" queue states are suppressed, but load_thresholds=none must be
used to avoid queues going into an alarm state since load values are not simulated.
Submitted jobs are dispatched, and act as if they are run for a time determined by
the job's first argument, after 3s spent in the "transferring" state. I.e. there
is a simulated 10s runtime for a command such as
qsub -b y sleep 10
In this condition, job deletion works, but at least interactive jobs, tightly-
integrated parallel ones, and job suspension don't. The execution hosts configured
need not exist, but must have resolvable network names.
NO_AUTHENTICATION
Don't do authentication when GSSAPI security is enabled. This, and the following
parameter, determine the GSS global configuration, which can be overridden with the
execd_params of the global or host-specific configuration.
NO_SECURITY
Don't store and forward credentials if GSSAPI security is enabled.
ENABLE_MTRACE
If GNU malloc is in use (rather then jemalloc, which is usually used on GNU/Linux)
enable the facility for recording all memory allocation/deallocation. Requires
MALLOC_TRACE to be set in the environment (see mtrace(3)).
__TEST_SLEEP_AFTER_REQUEST
Used by the test suite to block the worker thread for five seconds after handling a
request to ensure another worker thread will handle a subsequent request.
print_malloc_info
Allow monitoring malloc(3) statistics if Grid Engine is built to use the
jemalloc((3)) allocator. The information is usually obtained with the -info option
of qping(1), but is generated by the daemons and can't be controlled by the client.
The default is false since the output is verbose and might confuse programs parsing
the traditional format. The parameter can also be set in execd_params and affects
both qmaster and execd daemons.
Changing qmaster_params will take immediate effect, except that gdi_timeout, gdi_retries,
and cl_ping will take effect only for new connections. The default for qmaster_params is
none.
This value is a global configuration parameter only. It cannot be overwritten by the
execution host local configuration.
execd_params
This is used for passing additional parameters to the Grid Engine execution daemon. The
following values are recognized:
ACCT_RESERVED_USAGE
If this parameter is set to true, the usage of "reserved" (allocated) resources is
reported in the accounting entries cpu, mem, and maxvmem instead of the measured
usage. The live usage values reported by qstat(1) are affected similarly. This
means that the "wall clock" time (end-start) is reported instead of CPU time,
memory usage is memory allocation times wall clock time (which is only computable
if the job requests h_vmem or s_vmem), and maxvmem is the requested h_vmem or
s_vmem; the same scaling by slots is done as without this option.
Note that both the wall clock and CPU times are normally available (see
accounting(5)), so this option loses information, and "reserved" here has nothing
to do with advance/resource reservation. See also SHARETREE_RESERVED_USAGE below.
ENABLE_WINDOMACC
If this parameter is set to true, Windows Domain accounts (WinDomAcc) are used on
Windows hosts. These accounts require the use of sgepasswd(1). (See also
sgepasswd(5).) If this parameter is set to false, or is not set, local Windows
accounts are used. On non-Windows hosts, this parameter is ignored.
IGNORE_NGROUPS_MAX_LIMIT
If a user is assigned to NGROUPS_MAX-1 supplementary groups, so that Grid Engine is
not able to add one for job tracking, then the job will go into an error state when
it is started. (NGROUPS_MAX is the system limit on supplementary groups; see
limits.h(7).) Administrators that want to prevent the system doing so can set this
parameter. In this case the NGROUPS_MAX limit is ignored and the additional group
(see gid_range) is not set. As a result for those jobs no online usage will be
available. Also the parameter ENABLE_ADDGRP_KILL will have no effect. Please note
that it is not recommended to use this parameter. Instead the group membership of
the submit user should be reduced.
KEEP_ACTIVE
This value should only be set for debugging purposes. If set to true, the execution
daemon will not remove the spool directory maintained by sge_shepherd(8) for a job,
or cgroup directories if cgroups are in use under Linux.
PTF_MIN_PRIORITY, PTF_MAX_PRIORITY
The maximum/minimum priority which Grid Engine will assign to a job. Typically
this is a negative/positive value in the range of -20 (maximum) to 19 (minimum) for
systems which allow setting of priorities with the nice(2) system call. Other
systems may provide different ranges.
The default priority range (which varies from system to system) is installed either
by removing the parameters, or by setting a value of -999.
See the "messages" file of the execution daemon for the predefined default value on
your hosts. The values are logged during the startup of the execution daemon.
PROF_EXECD
Enables the profiling for the execution daemon (e.g. PROF_EXECD=true).
NOTIFY_KILL
This parameter allows you to change the notification signal for the signal SIGKILL
(see the -notify option of qsub(1)). The parameter either accepts signal names
(use the -l option of kill(1)) or the special value none. If set to none, no
notification signal will be sent. If it is set to TERM, for instance, or another
signal name, then this signal will be sent as the notification signal.
NOTIFY_SUSP
With this parameter it is possible to modify the notification signal for the signal
SIGSTOP (see the -notify parameter of qsub(1)). The parameter either accepts
signal names (use the -l option of kill(1)) or the special value none. If set to
none, no notification signal will be sent. If it is set to TSTP, for instance, or
another signal name, then this signal will be sent as notification signal.
SHARETREE_RESERVED_USAGE
If this parameter is set to true, the usage of "reserved" resources is taken for
the Grid Engine share tree consumption instead of measured usage. See the
description of ACCT_RESERVED_USAGE above for details.
Note: When running tightly integrated jobs with SHARETREE_RESERVED_USAGE set, and
with accounting_summary enabled in the parallel environment, reserved usage will
only be reported by the master task of the parallel job. No per-parallel task
usage records will be sent from execd to qmaster, which can significantly reduce
load on qmaster when running large tightly integrated parallel jobs.
USE_QSUB_GID
If this parameter is set to true, the primary group id active when a job was
submitted will be set to become the primary group id for job execution. If the
parameter is not set, the primary group id as defined for the job owner in the
execution host passwd database is used.
The feature is only available for jobs submitted via qsub(1), qrsh(1), qmake(1) and
qtcsh(1). Also, it only works for qrsh(1) jobs (and thus also for qtcsh(1) and
qmake(1)) if builtin communication is used, or the rsh and rshd components which
are provided with Grid Engine (see remote_startup(5)).
S_DESCRIPTORS, H_DESCRIPTORS, S_MAXPROC, H_MAXPROC, S_MEMORYLOCKED, H_MEMORYLOCKED,
S_LOCKS, H_LOCKS
Specifies soft and hard resource limits as implemented by the setrlimit(2) system
call. See that manual page on your system for more information. These parameters
complete the list of limits set by the RESOURCE LIMITS parameter of the queue
configuration as described in queue_conf(5). Unlike the resource limits in the
queue configuration, these resource limits are set for every job on this execution
host. If a value is not specified, the resource limit is inherited from the
execution daemon process. Because this would lead to unpredictable results if only
one limit of a resource is set (soft or hard), the corresponding other limit is set
to the same value.
S_DESCRIPTORS and H_DESCRIPTORS specify a value one greater than the maximum file
descriptor number that can be opened by any process of a job.
S_MAXPROC and H_MAXPROC specify the maximum number of processes that can be created
by the job user on this execution host.
S_MEMORYLOCKED and H_MEMORYLOCKED specify the maximum number of bytes of virtual
memory that may be locked into RAM. This typically needs to be set to "unlimited"
for use with openib Infiniband, and possibly similar transports.
S_LOCKS and H_LOCKS specify the maximum number of file locks any process of a job
may establish.
All of these values can be specified using the multiplier letters k, K, m, M, g and
G; see sge_types(1) for details. Limits can be specified as "infinity" to remove
limits (if possible), per setrlimit(2).
INHERIT_ENV
This parameter indicates whether the shepherd should allow the environment
inherited by the execution daemon from the shell that started it to be inherited by
the job it's starting. When true, any environment variable that is set in the
shell which starts the execution daemon at the time the execution daemon is started
will be set in the environment of any jobs run by that execution daemon, unless the
environment variable is explicitly overridden, such as PATH or LOGNAME. If set to
false, each job starts with only the environment variables that are explicitly
passed on by the execution daemon, such as PATH and LOGNAME. The default value is
true.
SET_LIB_PATH
This parameter tells the execution daemon whether to add the Grid Engine shared
library directory to the library path of executed jobs. If set to true, and
INHERIT_ENV is also set to true, the Grid Engine shared library directory will be
prepended to the library path which is inherited from the shell which started the
execution daemon. If INHERIT_ENV is set to false, the library path will contain
only the Grid Engine shared library directory. If set to false, and INHERIT_ENV is
set to true, the library path exported to the job will be the one inherited from
the shell which started the execution daemon. If INHERIT_ENV is also set to false,
the library path will be empty. After the execution daemon has set the library
path, it may be further altered by the shell in which the job is executed, or by
the job script itself. The default value for SET_LIB_PATH is false.
ENABLE_ADDGRP_KILL
If this parameter is set then Grid Engine uses the supplementary group ids (see
gid_range) to identify all processes which are to be terminated when a job is
deleted, or when sge_shepherd(8) cleans up after job termination. This currently
only works under GNU/Linux, Solaris, Tru64, FreeBSD, and Darwin. The default value
is on. Irrelevant with cpuset support (see USE_CGROUPS below).
PDC_INTERVAL
This parameter defines the interval (default 1s) between runs of the PDC (Portable
Data Collector) by the execution daemon. The PDC is responsible for enforcing the
resource limits s_cpu, h_cpu, s_vmem and h_vmem (see queue_conf(5)) and job usage
collection. The parameter can be set to a time_specifier (see sge_types(5)), to
PER_LOAD_REPORT or to NEVER.
If this parameter is set to PER_LOAD_REPORT the PDC is triggered in the same
interval as load_report_time (see above). If this parameter is set to NEVER the PDC
run is never triggered. The default is 1 second.
Note: A PDC run is quite compute intensive, and may degrade the performance of the
running jobs. However, if the PDC runs less often, or never, the online usage can
be incomplete or totally missing (for example online usage of very short running
jobs might be missing) and the resource limit enforcement is less accurate or would
not happen if PDC is turned off completely.
ENABLE_BINDING
If this parameter is set, then Grid Engine enables the core binding module within
the execution daemon to apply binding parameters that are specified at submission
time of a job. This parameter is set by default if Grid Engine was compiled with
support for core binding. Find more information for job to core binding in the
section -binding of qsub(1).
SIMULATE_JOBS
Allow the simulation of jobs. (Job spooling and execution on the execd side is
disabled.)
NO_AUTHENTICATION
Turn off authentication for the relevant host(s) when the authentication GSSAPI
security feature is enabled globally.
DO_AUTHENTICATION
Turn on authentication for the relevant host(s) when the authentication GSSAPI
security feature is enabled globally.
NO_SECURITY
Turn off storing and forwarding of credentials when the GSSAPI security feature is
enabled globally.
USE_SYSLOG
Write messages to the system logger (see syslog(3)) rather than into the spool
directory.
USE_QIDLE
Automatically start any executable named qidle present in the architecture-
dependent binary directory as a load sensor, similarly to qloadsensor (which is run
unconditionally). It is intended to determine whether a workstation is "idle" or
not, i.e. whether it has an interactive load. See e.g. the idle time HOWTO
⟨http://arc.liv.ac.uk/SGE/howto/idle.html⟩ or sources/experimental/qidle in the
source repository, but it may be better to check the the screensaver state.
USE_CGROUPS
[Linux only.] Use cgroups/cpusets for resource management if the system supports
them and the necessary directories exist in the relevant filesystems (possibly
created by util/resources/scripts/setup-cgroups-etc). Makes ENABLE_ADDGRP_KILL
irrelevant. This option is experimental, and at least the default is likely to
change in future. Default is no.
USE_SMAPS
[Linux only.] Read processes' smaps file in the proc(5) filesystem to obtain PSS
usage for most accurate memory accounting, or to obtain the swap usage on older
systems which don't report PSS. That can be slow when processes have very many
maps (observed with an FEM code), significantly increasing the load from execd, so
the default is no. Without smaps, usage is reported as RSS+swap, instead of
PSS+swap, or simply as the VMsize if the swap value isn't available.
print_malloc_info
See qmaster_params above.
DEMAND_LS
If true, generate load sensor reports just before sending them, making the data
fresher. The default is true. The switch is provided in case slow sensors are
found to have a bad effect on the execd.
Changing execd_params will take effect after it is propagated to the execution daemons.
The propagation is done in one load report interval. The default for execd_params is
none.
The global configuration entry for this value may be overwritten by the execution host
local configuration.
reporting_params
Used to define the behavior of reporting modules in the Grid Engine qmaster. Changes to
the reporting_params take immediate effect. The following values are recognized:
accounting
If this parameter is set to true, the accounting file is written. The accounting
file is a prerequisite for qacct(1).
reporting
If this parameter is set to true, the reporting file is written. The reporting
file contains data that can be used for monitoring and analysis, like job
accounting, job log, host load and consumables, queue status and consumables, and
sharetree configuration and usage. Attention: Depending on the size and load of
the cluster, the reporting file can become quite large. Only activate the reporting
file if you have a process running that will consume the reporting file! See
reporting(5) for further information about the format and contents of the reporting
file.
flush_time
The contents of the reporting file are buffered in the Grid Engine qmaster and
flushed at a fixed interval. This interval can be configured with the flush_time
parameter. It is specified as a time value in the format HH:MM:SS or a number of
seconds. Sensible values range from a few seconds to a minute. Setting it too low
may slow down the qmaster. Setting it too high will make the qmaster consume large
amounts of memory for buffering data. The reporting file is opened and closed for
each flush. Default 15s.
accounting_flush_time
The contents of the accounting file are buffered in the Grid Engine qmaster and
flushed at a fixed interval. This interval can be configured with the
accounting_flush_time parameter. It is specified as a time value in the format
HH:MM:SS. Sensible values range from a few seconds to one minute. Setting it too
low may slow down the qmaster. Setting it too high will make the qmaster consume
large amounts of memory for buffering data. Setting it to 0 disables buffering; as
soon as a record is generated, it will be written to the accounting file. If this
parameter is not set, the accounting data flush interval will default to the value
of the flush_time parameter. The accounting file is opened and closed for each
flush.
joblog If this parameter is set to true, the reporting file will contain job logging
information. See reporting(5) for more information about job logging.
sharelog
The Grid Engine qmaster can dump information about sharetree configuration and use
to the reporting file. The parameter sharelog sets an interval in which sharetree
information will be dumped. It is set in the format HH:MM:SS or a number of
seconds. A value of 0 (default) configures qmaster not to dump sharetree
information. Intervals of several minutes up to hours are sensible values for this
parameter. See reporting(5) for further information about sharelog.
log_consumables
This parameter controls writing of consumable resources to the reporting file.
When set to log_consumables=true information about all consumable resources (their
current usage and their capacity) will be written to the reporting file, whenever a
consumable resource changes either in definition, or in capacity, or when the usage
of an arbitrary consumable resource changes. When log_consumables is set to false
(default), only those variables will be written to the reporting file that are
configured in the report_variables in the exec host configuration and whose
definition or value actually changed. This parameter is deprecated and will get
removed in the next major release. See host_conf(5) for further information about
report_variables.
finished_jobs
Note: Deprecated, may be removed in a future release.
Grid Engine stores a certain number of just finished jobs to provide post mortem status
information via qstat -s z. The finished_jobs parameter defines the number of finished
("zombie") jobs stored. If this maximum number is reached, the eldest finished job will be
discarded for every new job added to the finished job list. (The zombie list is not
spooled, and so will be lost by a qmaster re-start.)
Changing finished_jobs will take immediate effect. The default for finished_jobs is 100.
This value is a global configuration parameter only. It cannot be overwritten by the
execution host local configuration.
qlogin_daemon
qlogin_command
rlogin_daemon
rlogin_command
rsh_daemon
rsh_command
These three pairs of entries are responsible for defining a remote startup method for
either interactive jobs by qlogin(1) or qrsh(1) without a command, or an interactive
qrsh(1) request with a command. The last startup method is also used to startup tasks on a
slave exechost of a tightly integrated parallel job. Each pair for one startup method
must contain matching communication methods. All entries can contain the value builtin
(which is the default) or a full path to a binary which should be used, and additional
arguments to this command if necessary.
The entries for the three ..._command definitions can, in addition, contain the value NONE
in case a particular startup method should be disabled.
Changing any of these entries will take immediate effect.
The global configuration entries for these values may be overwritten by a execution host
local configuration.
See remote_startup(5) for a detailed explanation of these settings.
delegated_file_staging
This flag must be set to "true" when the prolog and epilog are ready for delegated file
staging, so that the DRMAA attribute 'drmaa_transfer_files' is supported. To establish
delegated file staging, use the variables beginning with "$fs_..." in prolog and epilog to
move the input, output and error files from one host to the other. When this flag is set
to "false", no file staging is available for the DRMAA interface. File staging is
currently implemented only via the DRMAA interface. When an error occurs while moving the
input, output and error files, return error code 100 so that the error handling mechanism
can handle the error correctly. (See also FORBID_APPERROR.)
reprioritize
Note: Deprecated, may be removed in future release.
This flag enables or disables the reprioritization of jobs based on their ticket amount.
The reprioritize_interval in sched_conf(5) takes effect only if reprioritize is set to
true. To turn off job reprioritization, the reprioritize flag must be set to false and the
reprioritize_interval to 0, which is the default.
This value is a global configuration parameter only. It cannot be overridden by the
execution host local configuration.
jsv_url
This setting defines a server JSV instance which will be started and triggered by the
sge_qmaster(8) process. This JSV instance will be used to verify job specifications of
jobs before they are accepted and stored in the internal master database. The global
configuration entry for this value cannot be overwritten by execution host local
configurations.
Find more details concerning JSV in jsv(1) and sge_request(1).
The syntax of the jsv_url is specified in sge_types(1).
jsv_allowed_mod
If there is a server JSV script defined with the jsv_url parameter, then all qalter(1) or
qmon(1) modification requests for jobs are rejected by qmaster. With the jsv_allowed_mod
parameter an administrator has the possibility to allow a set of switches which can then
be used with clients to modify certain job attributes. The value for this parameter has to
be a comma-separated list of JSV job parameter names as documented in qsub(1), or the
value none to indicate that no modification should be allowed. Please note that even if
none is specified, the switches -w and -t are allowed for qalter.
libjvm_path
libjvm_path is usually set during qmaster installation and points to the absolute path of
libjvm.so (or the corresponding library depending on your architecture - e.g.
/usr/java/jre/lib/i386/server/libjvm.so). The referenced libjvm version must be at least
1.5. It is needed by the JVM qmaster thread only. If the Java VM needs additional
starting parameters they can be set in additional_jvm_args. Whether the JVM thread is
started at all can be defined in the bootstrap(5) file. If libjvm_path is empty, or an
incorrect path, the JVM thread fails to start.
The global configuration entry for this value may be overwritten by the execution host
local configuration.
additional_jvm_args
additional_jvm_args is usually set during qmaster installation. Details about possible
values additional_jvm_args can be found in the help output of the accompanying Java
command. This setting is normally not needed.
The global configuration entry for this value may be overwritten by the execution host
local configuration.
SECURITY
If prolog or epilog is specified with a user@ prefix, security considerations apply. The
methods are run in a user-supplied environment (via -V or -v) which provides a mechanism
to run arbitrary code as user (which might well be root) by setting variables such as
LD_LIBRARY_PATH and LD_PRELOAD to affect the running of the dynamically linked programs,
such as shells, which are used to implement the methods.
To combat this, known problematic variables are removed from the environment before
starting the methods other than as the job owner, but this may not be foolproof on
arbitrary systems with obscure variables. The environment can be safely controlled by
running the methods under a statically-linked version of env(1), such as typically
available using busybox(1), for example. Use
/bin/busybox env -u ...
to unset sensitive variables, or
/bin/busybox env -i name=value...
to set only specific variables. On some systems, such as recent Solaris, it is
essentially impossible to build static binaries. In that case it is typically possible to
use a setuid wrapper, relying on the dynamic linker to do the right thing. An example is
the safe_exec wrapper which is available from ⟨http://arc.liv.ac.uk/downloads/SGE/
support/⟩ at the time of writing. When using a non-shell scripting language wrapper for
the method daemon, try to use options which avoid interpreter-specific environmental
damage, such as Perl's -T and Python's -E. Privileged shell script wrappers should be
avoided if possible, and should be written carefully if they are used - e.g. invoke
programs with full file names - but if bash(1) is used, it should be run with the -p
option.
It is not currently possible to specify the variables unset, e.g. as a host-dependent
execd parameter, but certain system-dependent ones are selected. The list of sensitive
variables is taken mostly from GNU libc and sudo(1). It includes known system-dependent
dynamic linker ones, sensitive locale ones and others, like TMPDIR, but does not attempt
to deal interpreter-specific variables such as PYTHONPATH. The locale specification is
also sanitized. See the source file source/libs/uti2/sge_execvlp.c for details. Note
that TMPDIR is one of the variables affected, and may need to be recreated (as
/tmp/$JOB_ID.$TASK_ID.$QUEUE).
SEE ALSO
sge_intro(1), csh(1), qconf(1), qsub(1), jsv(1), rsh(1), sh(1), getpwnam(3),
drmaa_attributes(3), queue_conf(5), sched_conf(5), sge_types(1), sge_execd(8),
sge_qmaster(8), sge_shepherd(8), cron(8), remote_startup(5)
COPYRIGHT
See sge_intro(1) for a full statement of rights and permissions.